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Findings from a Genotyping Study of over 1000 People with Inherited Retinal Disorders in Ireland

The Irish national registry for inherited retinal degenerations (Target 5000) is a clinical and scientific program to identify individuals in Ireland with inherited retinal disorders and to attempt to ascertain the genetic cause underlying the disease pathology. Potential participants first undergo...

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Autores principales: Whelan, Laura, Dockery, Adrian, Wynne, Niamh, Zhu, Julia, Stephenson, Kirk, Silvestri, Giuliana, Turner, Jacqueline, O’Byrne, James J., Carrigan, Matthew, Humphries, Peter, Keegan, David, Kenna, Paul F., Farrar, G. Jane
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7016747/
https://www.ncbi.nlm.nih.gov/pubmed/31963381
http://dx.doi.org/10.3390/genes11010105
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author Whelan, Laura
Dockery, Adrian
Wynne, Niamh
Zhu, Julia
Stephenson, Kirk
Silvestri, Giuliana
Turner, Jacqueline
O’Byrne, James J.
Carrigan, Matthew
Humphries, Peter
Keegan, David
Kenna, Paul F.
Farrar, G. Jane
author_facet Whelan, Laura
Dockery, Adrian
Wynne, Niamh
Zhu, Julia
Stephenson, Kirk
Silvestri, Giuliana
Turner, Jacqueline
O’Byrne, James J.
Carrigan, Matthew
Humphries, Peter
Keegan, David
Kenna, Paul F.
Farrar, G. Jane
author_sort Whelan, Laura
collection PubMed
description The Irish national registry for inherited retinal degenerations (Target 5000) is a clinical and scientific program to identify individuals in Ireland with inherited retinal disorders and to attempt to ascertain the genetic cause underlying the disease pathology. Potential participants first undergo a clinical assessment, which includes clinical history and analysis with multimodal retinal imaging, electrophysiology, and visual field testing. If suitable for recruitment, a sample is taken and used for genetic analysis. Genetic analysis is conducted by use of a retinal gene panel target capture sequencing approach. With over 1000 participants from 710 pedigrees now screened, there is a positive candidate variant detection rate of approximately 70% (495/710). Where an autosomal recessive inheritance pattern is observed, an additional 9% (64/710) of probands have tested positive for a single candidate variant. Many novel variants have also been detected as part of this endeavor. The target capture approach is an economic and effective means of screening patients with inherited retinal disorders. Despite the advances in sequencing technology and the ever-decreasing associated processing costs, target capture remains an attractive option as the data produced is easily processed, analyzed, and stored compared to more comprehensive methods. However, with decreasing costs of whole genome and whole exome sequencing, the focus will likely move towards these methods for more comprehensive data generation.
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spelling pubmed-70167472020-02-28 Findings from a Genotyping Study of over 1000 People with Inherited Retinal Disorders in Ireland Whelan, Laura Dockery, Adrian Wynne, Niamh Zhu, Julia Stephenson, Kirk Silvestri, Giuliana Turner, Jacqueline O’Byrne, James J. Carrigan, Matthew Humphries, Peter Keegan, David Kenna, Paul F. Farrar, G. Jane Genes (Basel) Article The Irish national registry for inherited retinal degenerations (Target 5000) is a clinical and scientific program to identify individuals in Ireland with inherited retinal disorders and to attempt to ascertain the genetic cause underlying the disease pathology. Potential participants first undergo a clinical assessment, which includes clinical history and analysis with multimodal retinal imaging, electrophysiology, and visual field testing. If suitable for recruitment, a sample is taken and used for genetic analysis. Genetic analysis is conducted by use of a retinal gene panel target capture sequencing approach. With over 1000 participants from 710 pedigrees now screened, there is a positive candidate variant detection rate of approximately 70% (495/710). Where an autosomal recessive inheritance pattern is observed, an additional 9% (64/710) of probands have tested positive for a single candidate variant. Many novel variants have also been detected as part of this endeavor. The target capture approach is an economic and effective means of screening patients with inherited retinal disorders. Despite the advances in sequencing technology and the ever-decreasing associated processing costs, target capture remains an attractive option as the data produced is easily processed, analyzed, and stored compared to more comprehensive methods. However, with decreasing costs of whole genome and whole exome sequencing, the focus will likely move towards these methods for more comprehensive data generation. MDPI 2020-01-16 /pmc/articles/PMC7016747/ /pubmed/31963381 http://dx.doi.org/10.3390/genes11010105 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Whelan, Laura
Dockery, Adrian
Wynne, Niamh
Zhu, Julia
Stephenson, Kirk
Silvestri, Giuliana
Turner, Jacqueline
O’Byrne, James J.
Carrigan, Matthew
Humphries, Peter
Keegan, David
Kenna, Paul F.
Farrar, G. Jane
Findings from a Genotyping Study of over 1000 People with Inherited Retinal Disorders in Ireland
title Findings from a Genotyping Study of over 1000 People with Inherited Retinal Disorders in Ireland
title_full Findings from a Genotyping Study of over 1000 People with Inherited Retinal Disorders in Ireland
title_fullStr Findings from a Genotyping Study of over 1000 People with Inherited Retinal Disorders in Ireland
title_full_unstemmed Findings from a Genotyping Study of over 1000 People with Inherited Retinal Disorders in Ireland
title_short Findings from a Genotyping Study of over 1000 People with Inherited Retinal Disorders in Ireland
title_sort findings from a genotyping study of over 1000 people with inherited retinal disorders in ireland
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7016747/
https://www.ncbi.nlm.nih.gov/pubmed/31963381
http://dx.doi.org/10.3390/genes11010105
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