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Analysis of NAC Domain Transcription Factor Genes of Tectona grandis L.f. Involved in Secondary Cell Wall Deposition

NAC proteins are one of the largest families of plant-specific transcription factors (TFs). They regulate diverse complex biological processes, including secondary xylem differentiation and wood formation. Recent genomic and transcriptomic studies of Tectona grandis L.f. (teak), one of the most valu...

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Autores principales: Matias Hurtado, Fernando Manuel, Pinto, Maísa de Siqueira, de Oliveira, Perla Novais, Riaño-Pachón, Diego Mauricio, Inocente, Laura Beatriz, Carrer, Helaine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7016782/
https://www.ncbi.nlm.nih.gov/pubmed/31878092
http://dx.doi.org/10.3390/genes11010020
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author Matias Hurtado, Fernando Manuel
Pinto, Maísa de Siqueira
de Oliveira, Perla Novais
Riaño-Pachón, Diego Mauricio
Inocente, Laura Beatriz
Carrer, Helaine
author_facet Matias Hurtado, Fernando Manuel
Pinto, Maísa de Siqueira
de Oliveira, Perla Novais
Riaño-Pachón, Diego Mauricio
Inocente, Laura Beatriz
Carrer, Helaine
author_sort Matias Hurtado, Fernando Manuel
collection PubMed
description NAC proteins are one of the largest families of plant-specific transcription factors (TFs). They regulate diverse complex biological processes, including secondary xylem differentiation and wood formation. Recent genomic and transcriptomic studies of Tectona grandis L.f. (teak), one of the most valuable hardwood trees in the world, have allowed identification and analysis of developmental genes. In the present work, T. grandis NAC genes were identified and analyzed regarding to their evolution and expression profile during wood formation. We analyzed the recently published T. grandis genome, and identified 130 NAC proteins that are coded by 107 gene loci. These proteins were classified into 23 clades of the NAC family, together with Populus, Eucalyptus, and Arabidopsis. Data on transcript expression revealed specific temporal and spatial expression patterns for the majority of teak NAC genes. RT-PCR indicated expression of VND genes (Tg11g04450-VND2 and Tg15g08390-VND4) related to secondary cell wall formation in xylem vessels of 16-year-old juvenile trees. Our findings open a way to further understanding of NAC transcription factor genes in T. grandis wood biosynthesis, while they are potentially useful for future studies aiming to improve biomass and wood quality using biotechnological approaches.
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spelling pubmed-70167822020-02-28 Analysis of NAC Domain Transcription Factor Genes of Tectona grandis L.f. Involved in Secondary Cell Wall Deposition Matias Hurtado, Fernando Manuel Pinto, Maísa de Siqueira de Oliveira, Perla Novais Riaño-Pachón, Diego Mauricio Inocente, Laura Beatriz Carrer, Helaine Genes (Basel) Article NAC proteins are one of the largest families of plant-specific transcription factors (TFs). They regulate diverse complex biological processes, including secondary xylem differentiation and wood formation. Recent genomic and transcriptomic studies of Tectona grandis L.f. (teak), one of the most valuable hardwood trees in the world, have allowed identification and analysis of developmental genes. In the present work, T. grandis NAC genes were identified and analyzed regarding to their evolution and expression profile during wood formation. We analyzed the recently published T. grandis genome, and identified 130 NAC proteins that are coded by 107 gene loci. These proteins were classified into 23 clades of the NAC family, together with Populus, Eucalyptus, and Arabidopsis. Data on transcript expression revealed specific temporal and spatial expression patterns for the majority of teak NAC genes. RT-PCR indicated expression of VND genes (Tg11g04450-VND2 and Tg15g08390-VND4) related to secondary cell wall formation in xylem vessels of 16-year-old juvenile trees. Our findings open a way to further understanding of NAC transcription factor genes in T. grandis wood biosynthesis, while they are potentially useful for future studies aiming to improve biomass and wood quality using biotechnological approaches. MDPI 2019-12-23 /pmc/articles/PMC7016782/ /pubmed/31878092 http://dx.doi.org/10.3390/genes11010020 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Matias Hurtado, Fernando Manuel
Pinto, Maísa de Siqueira
de Oliveira, Perla Novais
Riaño-Pachón, Diego Mauricio
Inocente, Laura Beatriz
Carrer, Helaine
Analysis of NAC Domain Transcription Factor Genes of Tectona grandis L.f. Involved in Secondary Cell Wall Deposition
title Analysis of NAC Domain Transcription Factor Genes of Tectona grandis L.f. Involved in Secondary Cell Wall Deposition
title_full Analysis of NAC Domain Transcription Factor Genes of Tectona grandis L.f. Involved in Secondary Cell Wall Deposition
title_fullStr Analysis of NAC Domain Transcription Factor Genes of Tectona grandis L.f. Involved in Secondary Cell Wall Deposition
title_full_unstemmed Analysis of NAC Domain Transcription Factor Genes of Tectona grandis L.f. Involved in Secondary Cell Wall Deposition
title_short Analysis of NAC Domain Transcription Factor Genes of Tectona grandis L.f. Involved in Secondary Cell Wall Deposition
title_sort analysis of nac domain transcription factor genes of tectona grandis l.f. involved in secondary cell wall deposition
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7016782/
https://www.ncbi.nlm.nih.gov/pubmed/31878092
http://dx.doi.org/10.3390/genes11010020
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