Cargando…
Correcting Rate Constants from Anharmonic Molecular Dynamics for Quantum Effects
[Image: see text] Anharmonicity can greatly affect rate constants. One or even several orders of magnitude of deviation are found for obtaining rate constants using the standard rigid-rotor harmonic-oscillator model. In turn, reactive molecular dynamics (MD) simulations are a powerful way to explore...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2020
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7016917/ https://www.ncbi.nlm.nih.gov/pubmed/32064385 http://dx.doi.org/10.1021/acsomega.9b03383 |
_version_ | 1783497085717315584 |
---|---|
author | Schmalz, Felix Kopp, Wassja A. Kröger, Leif C. Leonhard, Kai |
author_facet | Schmalz, Felix Kopp, Wassja A. Kröger, Leif C. Leonhard, Kai |
author_sort | Schmalz, Felix |
collection | PubMed |
description | [Image: see text] Anharmonicity can greatly affect rate constants. One or even several orders of magnitude of deviation are found for obtaining rate constants using the standard rigid-rotor harmonic-oscillator model. In turn, reactive molecular dynamics (MD) simulations are a powerful way to explore chemical reaction networks and calculate rate constants from the fully anharmonic potential energy surface. However, the classical nature of the dynamics and the required numerical efficiency of the force field limit the accuracy of the resulting kinetics. We combine the best of both worlds by presenting an approximation that pairs anharmonic information intrinsic to classical MD with high-accuracy energies and frequencies from quantum-mechanical electronic structure calculations. The proposed scheme is applied to hydrogen abstractions in the methane system, which allows for the benchmarking of rate constants corrected by our approach against experimental rate constants. This comparison reveals a standard deviation of factor 2.6. Two archetypes of possible failure are identified in the course of a detailed investigation of the CH(3)(•) + H(•) → CH(2)(2•) + H(2) reaction. From this follows the application range of the method, within which the method shows a standard deviation of factor 2.1. The computational efficiency and beneficial scaling of the method allow for application to larger systems, as shown for hydrogen abstraction from 2-butanone by HO(2)(•). |
format | Online Article Text |
id | pubmed-7016917 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-70169172020-02-14 Correcting Rate Constants from Anharmonic Molecular Dynamics for Quantum Effects Schmalz, Felix Kopp, Wassja A. Kröger, Leif C. Leonhard, Kai ACS Omega [Image: see text] Anharmonicity can greatly affect rate constants. One or even several orders of magnitude of deviation are found for obtaining rate constants using the standard rigid-rotor harmonic-oscillator model. In turn, reactive molecular dynamics (MD) simulations are a powerful way to explore chemical reaction networks and calculate rate constants from the fully anharmonic potential energy surface. However, the classical nature of the dynamics and the required numerical efficiency of the force field limit the accuracy of the resulting kinetics. We combine the best of both worlds by presenting an approximation that pairs anharmonic information intrinsic to classical MD with high-accuracy energies and frequencies from quantum-mechanical electronic structure calculations. The proposed scheme is applied to hydrogen abstractions in the methane system, which allows for the benchmarking of rate constants corrected by our approach against experimental rate constants. This comparison reveals a standard deviation of factor 2.6. Two archetypes of possible failure are identified in the course of a detailed investigation of the CH(3)(•) + H(•) → CH(2)(2•) + H(2) reaction. From this follows the application range of the method, within which the method shows a standard deviation of factor 2.1. The computational efficiency and beneficial scaling of the method allow for application to larger systems, as shown for hydrogen abstraction from 2-butanone by HO(2)(•). American Chemical Society 2020-01-31 /pmc/articles/PMC7016917/ /pubmed/32064385 http://dx.doi.org/10.1021/acsomega.9b03383 Text en Copyright © 2020 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Schmalz, Felix Kopp, Wassja A. Kröger, Leif C. Leonhard, Kai Correcting Rate Constants from Anharmonic Molecular Dynamics for Quantum Effects |
title | Correcting Rate Constants from Anharmonic Molecular
Dynamics for Quantum Effects |
title_full | Correcting Rate Constants from Anharmonic Molecular
Dynamics for Quantum Effects |
title_fullStr | Correcting Rate Constants from Anharmonic Molecular
Dynamics for Quantum Effects |
title_full_unstemmed | Correcting Rate Constants from Anharmonic Molecular
Dynamics for Quantum Effects |
title_short | Correcting Rate Constants from Anharmonic Molecular
Dynamics for Quantum Effects |
title_sort | correcting rate constants from anharmonic molecular
dynamics for quantum effects |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7016917/ https://www.ncbi.nlm.nih.gov/pubmed/32064385 http://dx.doi.org/10.1021/acsomega.9b03383 |
work_keys_str_mv | AT schmalzfelix correctingrateconstantsfromanharmonicmoleculardynamicsforquantumeffects AT koppwassjaa correctingrateconstantsfromanharmonicmoleculardynamicsforquantumeffects AT krogerleifc correctingrateconstantsfromanharmonicmoleculardynamicsforquantumeffects AT leonhardkai correctingrateconstantsfromanharmonicmoleculardynamicsforquantumeffects |