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Identification of Astrocytoma Blood Serum Protein Profile
High-grade astrocytomas are some of the most common and aggressive brain cancers, whose signs and symptoms are initially non-specific. Up to the present date, there are no diagnostic tools to observe the early onset of the disease. Here, we analyzed the combination of blood serum proteins, which may...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7017117/ https://www.ncbi.nlm.nih.gov/pubmed/31861636 http://dx.doi.org/10.3390/cells9010016 |
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author | Vaitkiene, Paulina Urbanaviciute, Ruta Grigas, Povilas Steponaitis, Giedrius Tamasauskas, Arimantas Skiriutė, Daina |
author_facet | Vaitkiene, Paulina Urbanaviciute, Ruta Grigas, Povilas Steponaitis, Giedrius Tamasauskas, Arimantas Skiriutė, Daina |
author_sort | Vaitkiene, Paulina |
collection | PubMed |
description | High-grade astrocytomas are some of the most common and aggressive brain cancers, whose signs and symptoms are initially non-specific. Up to the present date, there are no diagnostic tools to observe the early onset of the disease. Here, we analyzed the combination of blood serum proteins, which may play key roles in the tumorigenesis and the progression of glial tumors. Fifty-nine astrocytoma patients and 43 control serums were analyzed using Custom Human Protein Antibody Arrays, including ten targets: ANGPT1, AREG, IGF1, IP10, MMP2, NCAM1, OPN, PAI1, TGFβ1, and TIMP1. The decision tree analysis indicates that serums ANGPT1, TIMP1, IP10, and TGFβ1 are promising combinations of targets for glioma diagnostic applications. The accuracy of the decision tree algorithm was 73.5% (75/102), which correctly classified 79.7% (47/59) astrocytomas and 65.1% (28/43) healthy controls. The analysis revealed that the relative value of osteopontin (OPN) protein level alone predicted the 12-month survival of glioblastoma (GBM) patients with the specificity of 84%, while the inclusion of the IP10 protein increased model predictability to 92.3%. In conclusion, the serum protein profiles of ANGPT1, TIMP1, IP10, and TGFβ1 were associated with the presence of astrocytoma independent of its malignancy grade, while OPN and IP10 were associated with GBM patient survival. |
format | Online Article Text |
id | pubmed-7017117 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-70171172020-02-28 Identification of Astrocytoma Blood Serum Protein Profile Vaitkiene, Paulina Urbanaviciute, Ruta Grigas, Povilas Steponaitis, Giedrius Tamasauskas, Arimantas Skiriutė, Daina Cells Article High-grade astrocytomas are some of the most common and aggressive brain cancers, whose signs and symptoms are initially non-specific. Up to the present date, there are no diagnostic tools to observe the early onset of the disease. Here, we analyzed the combination of blood serum proteins, which may play key roles in the tumorigenesis and the progression of glial tumors. Fifty-nine astrocytoma patients and 43 control serums were analyzed using Custom Human Protein Antibody Arrays, including ten targets: ANGPT1, AREG, IGF1, IP10, MMP2, NCAM1, OPN, PAI1, TGFβ1, and TIMP1. The decision tree analysis indicates that serums ANGPT1, TIMP1, IP10, and TGFβ1 are promising combinations of targets for glioma diagnostic applications. The accuracy of the decision tree algorithm was 73.5% (75/102), which correctly classified 79.7% (47/59) astrocytomas and 65.1% (28/43) healthy controls. The analysis revealed that the relative value of osteopontin (OPN) protein level alone predicted the 12-month survival of glioblastoma (GBM) patients with the specificity of 84%, while the inclusion of the IP10 protein increased model predictability to 92.3%. In conclusion, the serum protein profiles of ANGPT1, TIMP1, IP10, and TGFβ1 were associated with the presence of astrocytoma independent of its malignancy grade, while OPN and IP10 were associated with GBM patient survival. MDPI 2019-12-19 /pmc/articles/PMC7017117/ /pubmed/31861636 http://dx.doi.org/10.3390/cells9010016 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Vaitkiene, Paulina Urbanaviciute, Ruta Grigas, Povilas Steponaitis, Giedrius Tamasauskas, Arimantas Skiriutė, Daina Identification of Astrocytoma Blood Serum Protein Profile |
title | Identification of Astrocytoma Blood Serum Protein Profile |
title_full | Identification of Astrocytoma Blood Serum Protein Profile |
title_fullStr | Identification of Astrocytoma Blood Serum Protein Profile |
title_full_unstemmed | Identification of Astrocytoma Blood Serum Protein Profile |
title_short | Identification of Astrocytoma Blood Serum Protein Profile |
title_sort | identification of astrocytoma blood serum protein profile |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7017117/ https://www.ncbi.nlm.nih.gov/pubmed/31861636 http://dx.doi.org/10.3390/cells9010016 |
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