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Centric Fusions behind the Karyotype Evolution of Neotropical Nannostomus Pencilfishes (Characiforme, Lebiasinidae): First Insights from a Molecular Cytogenetic Perspective

Lebiasinidae is a Neotropical freshwater family widely distributed throughout South and Central America. Due to their often very small body size, Lebiasinidae species are cytogenetically challenging and hence largely underexplored. However, the available but limited karyotype data already suggested...

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Autores principales: Sember, Alexandr, de Oliveira, Ezequiel Aguiar, Ráb, Petr, Bertollo, Luiz Antonio Carlos, de Freitas, Natália Lourenço, Viana, Patrik Ferreira, Yano, Cassia Fernanda, Hatanaka, Terumi, Marinho, Manoela Maria Ferreira, de Moraes, Renata Luiza Rosa, Feldberg, Eliana, Cioffi, Marcelo de Bello
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7017317/
https://www.ncbi.nlm.nih.gov/pubmed/31941136
http://dx.doi.org/10.3390/genes11010091
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author Sember, Alexandr
de Oliveira, Ezequiel Aguiar
Ráb, Petr
Bertollo, Luiz Antonio Carlos
de Freitas, Natália Lourenço
Viana, Patrik Ferreira
Yano, Cassia Fernanda
Hatanaka, Terumi
Marinho, Manoela Maria Ferreira
de Moraes, Renata Luiza Rosa
Feldberg, Eliana
Cioffi, Marcelo de Bello
author_facet Sember, Alexandr
de Oliveira, Ezequiel Aguiar
Ráb, Petr
Bertollo, Luiz Antonio Carlos
de Freitas, Natália Lourenço
Viana, Patrik Ferreira
Yano, Cassia Fernanda
Hatanaka, Terumi
Marinho, Manoela Maria Ferreira
de Moraes, Renata Luiza Rosa
Feldberg, Eliana
Cioffi, Marcelo de Bello
author_sort Sember, Alexandr
collection PubMed
description Lebiasinidae is a Neotropical freshwater family widely distributed throughout South and Central America. Due to their often very small body size, Lebiasinidae species are cytogenetically challenging and hence largely underexplored. However, the available but limited karyotype data already suggested a high interspecific variability in the diploid chromosome number (2n), which is pronounced in the speciose genus Nannostomus, a popular taxon in ornamental fish trade due to its remarkable body coloration. Aiming to more deeply examine the karyotype diversification in Nannostomus, we combined conventional cytogenetics (Giemsa-staining and C-banding) with the chromosomal mapping of tandemly repeated 5S and 18S rDNA clusters and with interspecific comparative genomic hybridization (CGH) to investigate genomes of four representative Nannostomus species: N. beckfordi, N. eques, N. marginatus, and N. unifasciatus. Our data showed a remarkable variability in 2n, ranging from 2n = 22 in N. unifasciatus (karyotype composed exclusively of metacentrics/submetacentrics) to 2n = 44 in N. beckfordi (karyotype composed entirely of acrocentrics). On the other hand, patterns of 18S and 5S rDNA distribution in the analyzed karyotypes remained rather conservative, with only two 18S and two to four 5S rDNA sites. In view of the mostly unchanged number of chromosome arms (FN = 44) in all but one species (N. eques; FN = 36), and with respect to the current phylogenetic hypothesis, we propose Robertsonian translocations to be a significant contributor to the karyotype differentiation in (at least herein studied) Nannostomus species. Interspecific comparative genome hybridization (CGH) using whole genomic DNAs mapped against the chromosome background of N. beckfordi found a moderate divergence in the repetitive DNA content among the species’ genomes. Collectively, our data suggest that the karyotype differentiation in Nannostomus has been largely driven by major structural rearrangements, accompanied by only low to moderate dynamics of repetitive DNA at the sub-chromosomal level. Possible mechanisms and factors behind the elevated tolerance to such a rate of karyotype change in Nannostomus are discussed.
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spelling pubmed-70173172020-02-28 Centric Fusions behind the Karyotype Evolution of Neotropical Nannostomus Pencilfishes (Characiforme, Lebiasinidae): First Insights from a Molecular Cytogenetic Perspective Sember, Alexandr de Oliveira, Ezequiel Aguiar Ráb, Petr Bertollo, Luiz Antonio Carlos de Freitas, Natália Lourenço Viana, Patrik Ferreira Yano, Cassia Fernanda Hatanaka, Terumi Marinho, Manoela Maria Ferreira de Moraes, Renata Luiza Rosa Feldberg, Eliana Cioffi, Marcelo de Bello Genes (Basel) Article Lebiasinidae is a Neotropical freshwater family widely distributed throughout South and Central America. Due to their often very small body size, Lebiasinidae species are cytogenetically challenging and hence largely underexplored. However, the available but limited karyotype data already suggested a high interspecific variability in the diploid chromosome number (2n), which is pronounced in the speciose genus Nannostomus, a popular taxon in ornamental fish trade due to its remarkable body coloration. Aiming to more deeply examine the karyotype diversification in Nannostomus, we combined conventional cytogenetics (Giemsa-staining and C-banding) with the chromosomal mapping of tandemly repeated 5S and 18S rDNA clusters and with interspecific comparative genomic hybridization (CGH) to investigate genomes of four representative Nannostomus species: N. beckfordi, N. eques, N. marginatus, and N. unifasciatus. Our data showed a remarkable variability in 2n, ranging from 2n = 22 in N. unifasciatus (karyotype composed exclusively of metacentrics/submetacentrics) to 2n = 44 in N. beckfordi (karyotype composed entirely of acrocentrics). On the other hand, patterns of 18S and 5S rDNA distribution in the analyzed karyotypes remained rather conservative, with only two 18S and two to four 5S rDNA sites. In view of the mostly unchanged number of chromosome arms (FN = 44) in all but one species (N. eques; FN = 36), and with respect to the current phylogenetic hypothesis, we propose Robertsonian translocations to be a significant contributor to the karyotype differentiation in (at least herein studied) Nannostomus species. Interspecific comparative genome hybridization (CGH) using whole genomic DNAs mapped against the chromosome background of N. beckfordi found a moderate divergence in the repetitive DNA content among the species’ genomes. Collectively, our data suggest that the karyotype differentiation in Nannostomus has been largely driven by major structural rearrangements, accompanied by only low to moderate dynamics of repetitive DNA at the sub-chromosomal level. Possible mechanisms and factors behind the elevated tolerance to such a rate of karyotype change in Nannostomus are discussed. MDPI 2020-01-13 /pmc/articles/PMC7017317/ /pubmed/31941136 http://dx.doi.org/10.3390/genes11010091 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Sember, Alexandr
de Oliveira, Ezequiel Aguiar
Ráb, Petr
Bertollo, Luiz Antonio Carlos
de Freitas, Natália Lourenço
Viana, Patrik Ferreira
Yano, Cassia Fernanda
Hatanaka, Terumi
Marinho, Manoela Maria Ferreira
de Moraes, Renata Luiza Rosa
Feldberg, Eliana
Cioffi, Marcelo de Bello
Centric Fusions behind the Karyotype Evolution of Neotropical Nannostomus Pencilfishes (Characiforme, Lebiasinidae): First Insights from a Molecular Cytogenetic Perspective
title Centric Fusions behind the Karyotype Evolution of Neotropical Nannostomus Pencilfishes (Characiforme, Lebiasinidae): First Insights from a Molecular Cytogenetic Perspective
title_full Centric Fusions behind the Karyotype Evolution of Neotropical Nannostomus Pencilfishes (Characiforme, Lebiasinidae): First Insights from a Molecular Cytogenetic Perspective
title_fullStr Centric Fusions behind the Karyotype Evolution of Neotropical Nannostomus Pencilfishes (Characiforme, Lebiasinidae): First Insights from a Molecular Cytogenetic Perspective
title_full_unstemmed Centric Fusions behind the Karyotype Evolution of Neotropical Nannostomus Pencilfishes (Characiforme, Lebiasinidae): First Insights from a Molecular Cytogenetic Perspective
title_short Centric Fusions behind the Karyotype Evolution of Neotropical Nannostomus Pencilfishes (Characiforme, Lebiasinidae): First Insights from a Molecular Cytogenetic Perspective
title_sort centric fusions behind the karyotype evolution of neotropical nannostomus pencilfishes (characiforme, lebiasinidae): first insights from a molecular cytogenetic perspective
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7017317/
https://www.ncbi.nlm.nih.gov/pubmed/31941136
http://dx.doi.org/10.3390/genes11010091
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