Genome-Wide Analysis of the NAC Domain Transcription Factor Gene Family in Theobroma cacao

As a plant-specific transcription factor, the NAC (NAM, ATAF1/2 and CUC2) domain protein plays an important role in plant growth and development, as well as stress resistance. Based on the genomic data of the cacao tree, this study identified 102 cacao NAC genes and named them according to their loc...

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Autores principales: Shen, Shiya, Zhang, Qianru, Shi, Yu, Sun, Zhenmei, Zhang, Qianqian, Hou, Sijia, Wu, Rongling, Jiang, Libo, Zhao, Xiyang, Guo, Yunqian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7017368/
https://www.ncbi.nlm.nih.gov/pubmed/31905649
http://dx.doi.org/10.3390/genes11010035
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author Shen, Shiya
Zhang, Qianru
Shi, Yu
Sun, Zhenmei
Zhang, Qianqian
Hou, Sijia
Wu, Rongling
Jiang, Libo
Zhao, Xiyang
Guo, Yunqian
author_facet Shen, Shiya
Zhang, Qianru
Shi, Yu
Sun, Zhenmei
Zhang, Qianqian
Hou, Sijia
Wu, Rongling
Jiang, Libo
Zhao, Xiyang
Guo, Yunqian
author_sort Shen, Shiya
collection PubMed
description As a plant-specific transcription factor, the NAC (NAM, ATAF1/2 and CUC2) domain protein plays an important role in plant growth and development, as well as stress resistance. Based on the genomic data of the cacao tree, this study identified 102 cacao NAC genes and named them according to their location within the genome. The phylogeny of the protein sequence of the cacao tree NAC family was analyzed using various bioinformatic methods, and then divided into 12 subfamilies. Then, the amino-acid composition, physicochemical properties, genomic location, gene structure, conserved domains, and promoter cis-acting elements were analyzed. This study provides information on the evolution of the TcNAC gene and its possible functions, laying the foundation for further research on the NAC family.
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spelling pubmed-70173682020-02-28 Genome-Wide Analysis of the NAC Domain Transcription Factor Gene Family in Theobroma cacao Shen, Shiya Zhang, Qianru Shi, Yu Sun, Zhenmei Zhang, Qianqian Hou, Sijia Wu, Rongling Jiang, Libo Zhao, Xiyang Guo, Yunqian Genes (Basel) Article As a plant-specific transcription factor, the NAC (NAM, ATAF1/2 and CUC2) domain protein plays an important role in plant growth and development, as well as stress resistance. Based on the genomic data of the cacao tree, this study identified 102 cacao NAC genes and named them according to their location within the genome. The phylogeny of the protein sequence of the cacao tree NAC family was analyzed using various bioinformatic methods, and then divided into 12 subfamilies. Then, the amino-acid composition, physicochemical properties, genomic location, gene structure, conserved domains, and promoter cis-acting elements were analyzed. This study provides information on the evolution of the TcNAC gene and its possible functions, laying the foundation for further research on the NAC family. MDPI 2019-12-28 /pmc/articles/PMC7017368/ /pubmed/31905649 http://dx.doi.org/10.3390/genes11010035 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Shen, Shiya
Zhang, Qianru
Shi, Yu
Sun, Zhenmei
Zhang, Qianqian
Hou, Sijia
Wu, Rongling
Jiang, Libo
Zhao, Xiyang
Guo, Yunqian
Genome-Wide Analysis of the NAC Domain Transcription Factor Gene Family in Theobroma cacao
title Genome-Wide Analysis of the NAC Domain Transcription Factor Gene Family in Theobroma cacao
title_full Genome-Wide Analysis of the NAC Domain Transcription Factor Gene Family in Theobroma cacao
title_fullStr Genome-Wide Analysis of the NAC Domain Transcription Factor Gene Family in Theobroma cacao
title_full_unstemmed Genome-Wide Analysis of the NAC Domain Transcription Factor Gene Family in Theobroma cacao
title_short Genome-Wide Analysis of the NAC Domain Transcription Factor Gene Family in Theobroma cacao
title_sort genome-wide analysis of the nac domain transcription factor gene family in theobroma cacao
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7017368/
https://www.ncbi.nlm.nih.gov/pubmed/31905649
http://dx.doi.org/10.3390/genes11010035
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