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Population-specific, recent positive directional selection suggests adaptation of human male reproductive genes to different environmental conditions

BACKGROUND: Recent human transcriptomic analyses revealed a very large number of testis-enriched genes, many of which are involved in spermatogenesis. This comprehensive transcriptomic data lead us to the question whether positive selection was a decisive force influencing the evolution and variabil...

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Autores principales: Schaschl, Helmut, Wallner, Bernard
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7020506/
https://www.ncbi.nlm.nih.gov/pubmed/32054438
http://dx.doi.org/10.1186/s12862-019-1575-0
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author Schaschl, Helmut
Wallner, Bernard
author_facet Schaschl, Helmut
Wallner, Bernard
author_sort Schaschl, Helmut
collection PubMed
description BACKGROUND: Recent human transcriptomic analyses revealed a very large number of testis-enriched genes, many of which are involved in spermatogenesis. This comprehensive transcriptomic data lead us to the question whether positive selection was a decisive force influencing the evolution and variability of testis-enriched genes in humans. We used two methodological approaches to detect different levels of positive selection, namely episodic positive diversifying selection (i.e., past selection) in the human lineage within primate phylogeny, potentially driven by sperm competition, and recent positive directional selection in contemporary human populations, which would indicate adaptation to different environments. RESULTS: In the human lineage (after correction for multiple testing) we found that only the gene TULP2, for which no functional data are yet available, is subject to episodic positive diversifying selection. Using less stringent statistical criteria (uncorrected p-values), also the gene SPATA16, which has a pivotal role in male fertility and for which episodes of adaptive evolution have been suggested, also displays a putative signal of diversifying selection in the human branch. At the same time, we found evidence for recent positive directional selection acting on several human testis-enriched genes (MORC1, SLC9B1, ROPN1L, DMRT1, PLCZ1, RNF17, FAM71D and WBP2NL) that play important roles in human spermatogenesis and fertilization. Most of these genes are population-specifically under positive selection. CONCLUSION: Episodic diversifying selection, possibly driven by sperm competition, was not an important force driving the evolution of testis-enriched genes in the human lineage. Population-specific, recent positive directional selection suggests an adaptation of male reproductive genes to different environmental conditions. Positive selection acts on eQTLS and sQTLs, indicating selective effects on important gene regulatory functions. In particular, the transcriptional diversity regulated by sQTLs in testis-enriched genes may be important for spermatocytes to respond to environmental and physiological stress.
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spelling pubmed-70205062020-02-20 Population-specific, recent positive directional selection suggests adaptation of human male reproductive genes to different environmental conditions Schaschl, Helmut Wallner, Bernard BMC Evol Biol Research Article BACKGROUND: Recent human transcriptomic analyses revealed a very large number of testis-enriched genes, many of which are involved in spermatogenesis. This comprehensive transcriptomic data lead us to the question whether positive selection was a decisive force influencing the evolution and variability of testis-enriched genes in humans. We used two methodological approaches to detect different levels of positive selection, namely episodic positive diversifying selection (i.e., past selection) in the human lineage within primate phylogeny, potentially driven by sperm competition, and recent positive directional selection in contemporary human populations, which would indicate adaptation to different environments. RESULTS: In the human lineage (after correction for multiple testing) we found that only the gene TULP2, for which no functional data are yet available, is subject to episodic positive diversifying selection. Using less stringent statistical criteria (uncorrected p-values), also the gene SPATA16, which has a pivotal role in male fertility and for which episodes of adaptive evolution have been suggested, also displays a putative signal of diversifying selection in the human branch. At the same time, we found evidence for recent positive directional selection acting on several human testis-enriched genes (MORC1, SLC9B1, ROPN1L, DMRT1, PLCZ1, RNF17, FAM71D and WBP2NL) that play important roles in human spermatogenesis and fertilization. Most of these genes are population-specifically under positive selection. CONCLUSION: Episodic diversifying selection, possibly driven by sperm competition, was not an important force driving the evolution of testis-enriched genes in the human lineage. Population-specific, recent positive directional selection suggests an adaptation of male reproductive genes to different environmental conditions. Positive selection acts on eQTLS and sQTLs, indicating selective effects on important gene regulatory functions. In particular, the transcriptional diversity regulated by sQTLs in testis-enriched genes may be important for spermatocytes to respond to environmental and physiological stress. BioMed Central 2020-02-13 /pmc/articles/PMC7020506/ /pubmed/32054438 http://dx.doi.org/10.1186/s12862-019-1575-0 Text en © The Author(s). 2020 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Schaschl, Helmut
Wallner, Bernard
Population-specific, recent positive directional selection suggests adaptation of human male reproductive genes to different environmental conditions
title Population-specific, recent positive directional selection suggests adaptation of human male reproductive genes to different environmental conditions
title_full Population-specific, recent positive directional selection suggests adaptation of human male reproductive genes to different environmental conditions
title_fullStr Population-specific, recent positive directional selection suggests adaptation of human male reproductive genes to different environmental conditions
title_full_unstemmed Population-specific, recent positive directional selection suggests adaptation of human male reproductive genes to different environmental conditions
title_short Population-specific, recent positive directional selection suggests adaptation of human male reproductive genes to different environmental conditions
title_sort population-specific, recent positive directional selection suggests adaptation of human male reproductive genes to different environmental conditions
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7020506/
https://www.ncbi.nlm.nih.gov/pubmed/32054438
http://dx.doi.org/10.1186/s12862-019-1575-0
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