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Clustering of Brain Function Network Based on Attribute and Structural Information and Its Application in Brain Diseases
At present, the diagnosis of brain disease is mainly based on the self-reported symptoms and clinical signs of the patient, which can easily lead to psychiatrists' bias. The purpose of this study is to develop a brain network clustering model to accurately identify brain diseases based on resti...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7020566/ https://www.ncbi.nlm.nih.gov/pubmed/32116624 http://dx.doi.org/10.3389/fninf.2019.00079 |
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author | Cui, Xiaohong Xiao, Jihai Guo, Hao Wang, Bin Li, Dandan Niu, Yan Xiang, Jie Chen, Junjie |
author_facet | Cui, Xiaohong Xiao, Jihai Guo, Hao Wang, Bin Li, Dandan Niu, Yan Xiang, Jie Chen, Junjie |
author_sort | Cui, Xiaohong |
collection | PubMed |
description | At present, the diagnosis of brain disease is mainly based on the self-reported symptoms and clinical signs of the patient, which can easily lead to psychiatrists' bias. The purpose of this study is to develop a brain network clustering model to accurately identify brain diseases based on resting state functional magnetic resonance imaging (fMRI) in the absence of clinical information. We use cosine similarity and sub-network kernels to measure attribute similarity and structure similarity, respectively. By integrating the structure similarity and attribute similarity into one matrix, spectral clustering is used to achieve brain network clustering. Finally, we evaluate this method on three diseases: Alzheimer's disease, Bipolar disorder patients, and Schizophrenia. The performance of methods is evaluated by measuring clustering consistency. Clustering consistency is similar to clustering accuracy, which is used to evaluate the consistency between the clustering labels and clinical diagnostic labels of the subjects. The experimental results show that our proposed method can significantly improve clustering performance, with a consistency of 60.6% for Alzheimer's disease, with a consistency of 100% for Schizophrenia, with a consistency of 100% for Bipolar disorder patients. |
format | Online Article Text |
id | pubmed-7020566 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-70205662020-02-28 Clustering of Brain Function Network Based on Attribute and Structural Information and Its Application in Brain Diseases Cui, Xiaohong Xiao, Jihai Guo, Hao Wang, Bin Li, Dandan Niu, Yan Xiang, Jie Chen, Junjie Front Neuroinform Neuroscience At present, the diagnosis of brain disease is mainly based on the self-reported symptoms and clinical signs of the patient, which can easily lead to psychiatrists' bias. The purpose of this study is to develop a brain network clustering model to accurately identify brain diseases based on resting state functional magnetic resonance imaging (fMRI) in the absence of clinical information. We use cosine similarity and sub-network kernels to measure attribute similarity and structure similarity, respectively. By integrating the structure similarity and attribute similarity into one matrix, spectral clustering is used to achieve brain network clustering. Finally, we evaluate this method on three diseases: Alzheimer's disease, Bipolar disorder patients, and Schizophrenia. The performance of methods is evaluated by measuring clustering consistency. Clustering consistency is similar to clustering accuracy, which is used to evaluate the consistency between the clustering labels and clinical diagnostic labels of the subjects. The experimental results show that our proposed method can significantly improve clustering performance, with a consistency of 60.6% for Alzheimer's disease, with a consistency of 100% for Schizophrenia, with a consistency of 100% for Bipolar disorder patients. Frontiers Media S.A. 2020-02-07 /pmc/articles/PMC7020566/ /pubmed/32116624 http://dx.doi.org/10.3389/fninf.2019.00079 Text en Copyright © 2020 Cui, Xiao, Guo, Wang, Li, Niu, Xiang and Chen. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Cui, Xiaohong Xiao, Jihai Guo, Hao Wang, Bin Li, Dandan Niu, Yan Xiang, Jie Chen, Junjie Clustering of Brain Function Network Based on Attribute and Structural Information and Its Application in Brain Diseases |
title | Clustering of Brain Function Network Based on Attribute and Structural Information and Its Application in Brain Diseases |
title_full | Clustering of Brain Function Network Based on Attribute and Structural Information and Its Application in Brain Diseases |
title_fullStr | Clustering of Brain Function Network Based on Attribute and Structural Information and Its Application in Brain Diseases |
title_full_unstemmed | Clustering of Brain Function Network Based on Attribute and Structural Information and Its Application in Brain Diseases |
title_short | Clustering of Brain Function Network Based on Attribute and Structural Information and Its Application in Brain Diseases |
title_sort | clustering of brain function network based on attribute and structural information and its application in brain diseases |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7020566/ https://www.ncbi.nlm.nih.gov/pubmed/32116624 http://dx.doi.org/10.3389/fninf.2019.00079 |
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