Cargando…

Doing More with Less: A Comparison of 16S Hypervariable Regions in Search of Defining the Shrimp Microbiota

The shrimp has become the most valuable traded marine product in the world, and its microbiota plays an essential role in its development and overall health status. Massive high-throughput sequencing techniques using several hypervariable regions of the 16S rRNA gene are broadly applied in shrimp mi...

Descripción completa

Detalles Bibliográficos
Autores principales:	García-López, Rodrigo, Cornejo-Granados, Fernanda, Lopez-Zavala, Alonso A., Sánchez-López, Filiberto, Cota-Huízar, Andrés, Sotelo-Mundo, Rogerio R., Guerrero, Abraham, Mendoza-Vargas, Alfredo, Gómez-Gil, Bruno, Ochoa-Leyva, Adrian
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2020
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7022540/ https://www.ncbi.nlm.nih.gov/pubmed/31963525 http://dx.doi.org/10.3390/microorganisms8010134

Ejemplares similares

OTUs and ASVs Produce Comparable Taxonomic and Diversity from Shrimp Microbiota 16S Profiles Using Tailored Abundance Filters
por: García-López, Rodrigo, et al.
Publicado: (2021)

Agavin induces beneficial microbes in the shrimp microbiota under farming conditions
por: Ochoa-Romo, Juan Pablo, et al.
Publicado: (2022)

Microbiome of Pacific Whiteleg shrimp reveals differential bacterial community composition between Wild, Aquacultured and AHPND/EMS outbreak conditions
por: Cornejo-Granados, Fernanda, et al.
Publicado: (2017)

A novel approach for human whole transcriptome analysis based on absolute gene expression of microarray data
por: Bikel, Shirley, et al.
Publicado: (2017)

A Novel Glutathione S-Transferase Gtt2 Class (VpGSTT2) Is Found in the Genome of the AHPND/EMS Vibrio parahaemolyticus Shrimp Pathogen
por: Valenzuela-Chavira, Ignacio, et al.
Publicado: (2021)

High-Quality Draft Genomes of Two Vibrio parahaemolyticus Strains Aid in Understanding Acute Hepatopancreatic Necrosis Disease of Cultured Shrimps in Mexico
por: Gomez-Jimenez, Silvia, et al.
Publicado: (2014)

Role of Clathrin Assembly Protein-2 Beta Subunit during White Spot Syndrome Virus Infection in Black Tiger Shrimp Penaeus monodon
por: Jatuyosporn, Thapanan, et al.
Publicado: (2019)

PmAP2-β depletion enhanced activation of the Toll signaling pathway during yellow head virus infection in the black tiger shrimp Penaeus monodon
por: Jatuyosporn, Thapanan, et al.
Publicado: (2021)

Functional and taxonomic classification of a greenhouse water drain metagenome
por: López-Leal, Gamaliel, et al.
Publicado: (2018)

Metatranscriptomic analysis to define the Secrebiome, and 16S rRNA profiling of the gut microbiome in obesity and metabolic syndrome of Mexican children
por: Gallardo-Becerra, Luigui, et al.
Publicado: (2020)

Crystal Structure of the Shrimp Proliferating Cell Nuclear Antigen: Structural Complementarity with WSSV DNA Polymerase PIP-Box
por: Carrasco-Miranda, Jesus S., et al.
Publicado: (2014)

A meta-analysis reveals the environmental and host factors shaping the structure and function of the shrimp microbiota
por: Cornejo-Granados, Fernanda, et al.
Publicado: (2018)

Gut dsDNA virome shows diversity and richness alterations associated with childhood obesity and metabolic syndrome
por: Bikel, Shirley, et al.
Publicado: (2021)

White spot syndrome virus impact on the expression of immune genes and gut microbiome of black tiger shrimp Penaeus monodon
por: Jatuyosporn, Thapanan, et al.
Publicado: (2023)

Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture
por: Ghaffari, Noushin, et al.
Publicado: (2014)

Secretome Prediction of Two M. tuberculosis Clinical Isolates Reveals Their High Antigenic Density and Potential Drug Targets
por: Cornejo-Granados, Fernanda, et al.
Publicado: (2017)

A novel thymidylate synthase from the Vibrionales, Alteromonadales, Aeromonadales, and Pasteurellales (VAAP) clade with altered nucleotide and folate binding sites
por: Lopez-Zavala, Alonso A., et al.
Publicado: (2018)

Whole-genome of Mexican-crAssphage isolated from the human gut microbiome
por: Cervantes-Echeverría, Melany, et al.
Publicado: (2018)

Biochemical Characterization of a Novel α/β-Hydrolase/FSH from the White Shrimp Litopenaeus vannamei
por: Garcia-Orozco, Karina D., et al.
Publicado: (2019)

Biochemical and structural characterization of a novel arginine kinase from the spider Polybetes pythagoricus
por: Laino, Aldana, et al.
Publicado: (2017)

Membrane Tethering Potency of Rab-Family Small GTPases Is Defined by the C-Terminal Hypervariable Regions
por: Ueda, Sanae, et al.
Publicado: (2020)

FRI652 Type 2 Diabetes Management: More GLP1 Agonists And Less Metformin?
por: Lopez Maldonado, Francisco J, et al.
Publicado: (2023)

The greening reaction of skipjack tuna (Katsuwonus pelamis) metmyoglobin promoted by free cysteine during thermal treatment
por: Álvarez-Armenta, Andrés, et al.
Publicado: (2022)

Protocol for the isolation, sequencing, and analysis of the gut phageome from human fecal samples
por: Bikel, Shirley, et al.
Publicado: (2022)

Membrane interactions of the globular domain and the hypervariable region of KRAS4b define its unique diffusion behavior
por: Goswami, Debanjan, et al.
Publicado: (2020)

A (1)H NMR Investigation of the Interaction between Phenolic Acids Found in Mango (Manguifera indica cv Ataulfo) and Papaya (Carica papaya cv Maradol) and 1,1-diphenyl-2-picrylhydrazyl (DPPH) Free Radicals
por: López-Martínez, Luis M., et al.
Publicado: (2015)

The Two-Faced Role of crAssphage Subfamilies in Obesity and Metabolic Syndrome: Between Good and Evil
por: Cervantes-Echeverría, Melany, et al.
Publicado: (2023)

Complete genome sequence and characterization of a novel Enterococcus faecium with probiotic potential isolated from the gut of Litopenaeus vannamei
por: Chino de la Cruz, Citlali Melissa, et al.
Publicado: (2023)

Defining Biomarkers to Predict Natural Resolution in Shrimp Allergy
por: Piboonpocanun, Surapon, et al.
Publicado: (2022)

Structural Basis for the Limited Response to Oxidative and Thiol-Conjugating Agents by Triosephosphate Isomerase From the Photosynthetic Bacteria Synechocystis
por: Castro-Torres, Eduardo, et al.
Publicado: (2018)

Evolution of the hepatitis E virus hypervariable region
por: Smith, Donald B., et al.
Publicado: (2012)

Hypervariability of accessible and inaccessible conformational space of proteins()
por: Ravikumar, Ashraya, et al.
Publicado: (2021)

A Simple Extension to the CMASA Method for the Prediction of Catalytic Residues in the Presence of Single Point Mutations
por: Flores, David I., et al.
Publicado: (2014)

Determining the most accurate 16S rRNA hypervariable region for taxonomic identification from respiratory samples
por: López-Aladid, Ruben, et al.
Publicado: (2023)

Genotypic analysis of two hypervariable human cytomegalovirus genes
por: Bradley, Amanda J, et al.
Publicado: (2008)

Strawberry cultivar identification based on hypervariable SSR markers
por: Honjo, Masanori, et al.
Publicado: (2011)

Hypervariable antigen genes in malaria have ancient roots
por: Zilversmit, Martine M, et al.
Publicado: (2013)

Population genomics of picophytoplankton unveils novel chromosome hypervariability
por: Blanc-Mathieu, Romain, et al.
Publicado: (2017)

Genetic hypervariability of a Northeastern Atlantic venomous rockfish
por: Francisco, Sara M., et al.
Publicado: (2021)

Synthetic peptides corresponding to third hypervariable region of human monoclonal IgM rheumatoid factor heavy chains define an immunodominant idiotype
Publicado: (1985)

Cannot write session to /tmp/vufind_sessions/sess_016ch4eio918ms8n7adc65gaof