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Combined analysis of whole‐exon sequencing and lncRNA sequencing in type 2 diabetes mellitus patients with obesity
This study sought to find more exon mutation sites and lncRNA candidates associated with type 2 diabetes mellitus (T2DM) patients with obesity (O‐T2DM). We used O‐T2DM patients and healthy individuals to detect mutations in their peripheral blood by whole‐exon sequencing. And changes in lncRNA expre...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7028848/ https://www.ncbi.nlm.nih.gov/pubmed/31957265 http://dx.doi.org/10.1111/jcmm.14932 |
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author | An, Tian Zhang, Jing Liu, Yu‐Fei Wu, Yan‐Xiang Lian, Juan Wang, Ting‐Ye Hu, Yuan‐yuan Zhu, Jia‐jian Huang, Jiangpinghao Zhao, Dan‐Dan Mo, Fang‐Fang Gao, Si‐Hua Jiang, Guang‐Jian |
author_facet | An, Tian Zhang, Jing Liu, Yu‐Fei Wu, Yan‐Xiang Lian, Juan Wang, Ting‐Ye Hu, Yuan‐yuan Zhu, Jia‐jian Huang, Jiangpinghao Zhao, Dan‐Dan Mo, Fang‐Fang Gao, Si‐Hua Jiang, Guang‐Jian |
author_sort | An, Tian |
collection | PubMed |
description | This study sought to find more exon mutation sites and lncRNA candidates associated with type 2 diabetes mellitus (T2DM) patients with obesity (O‐T2DM). We used O‐T2DM patients and healthy individuals to detect mutations in their peripheral blood by whole‐exon sequencing. And changes in lncRNA expression caused by mutation sites were studied at the RNA level. Then, we performed GO analysis and KEGG pathway analysis. We found a total of 277 377 mutation sites between O‐T2DM and healthy individuals. Then, we performed a DNA‐RNA joint analysis. Based on the screening of harmful sites, 30 mutant genes shared in O‐T2DM patients were screened. At the RNA level, mutations of 106 differentially expressed genes were displayed. Finally, a consensus mutation site and differential expression consensus gene screening were performed. In the current study, the results revealed significant differences in exon sites in peripheral blood between O‐T2DM and healthy individuals, which may play an important role in the pathogenesis of O‐T2DM by affecting the expression of the corresponding lncRNA. This study provides clues to the molecular mechanisms of metabolic disorders in O‐T2DM patients at the DNA and RNA levels, as well as biomarkers of the risk of these disorders. |
format | Online Article Text |
id | pubmed-7028848 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-70288482020-02-19 Combined analysis of whole‐exon sequencing and lncRNA sequencing in type 2 diabetes mellitus patients with obesity An, Tian Zhang, Jing Liu, Yu‐Fei Wu, Yan‐Xiang Lian, Juan Wang, Ting‐Ye Hu, Yuan‐yuan Zhu, Jia‐jian Huang, Jiangpinghao Zhao, Dan‐Dan Mo, Fang‐Fang Gao, Si‐Hua Jiang, Guang‐Jian J Cell Mol Med Original Articles This study sought to find more exon mutation sites and lncRNA candidates associated with type 2 diabetes mellitus (T2DM) patients with obesity (O‐T2DM). We used O‐T2DM patients and healthy individuals to detect mutations in their peripheral blood by whole‐exon sequencing. And changes in lncRNA expression caused by mutation sites were studied at the RNA level. Then, we performed GO analysis and KEGG pathway analysis. We found a total of 277 377 mutation sites between O‐T2DM and healthy individuals. Then, we performed a DNA‐RNA joint analysis. Based on the screening of harmful sites, 30 mutant genes shared in O‐T2DM patients were screened. At the RNA level, mutations of 106 differentially expressed genes were displayed. Finally, a consensus mutation site and differential expression consensus gene screening were performed. In the current study, the results revealed significant differences in exon sites in peripheral blood between O‐T2DM and healthy individuals, which may play an important role in the pathogenesis of O‐T2DM by affecting the expression of the corresponding lncRNA. This study provides clues to the molecular mechanisms of metabolic disorders in O‐T2DM patients at the DNA and RNA levels, as well as biomarkers of the risk of these disorders. John Wiley and Sons Inc. 2020-01-19 2020-02 /pmc/articles/PMC7028848/ /pubmed/31957265 http://dx.doi.org/10.1111/jcmm.14932 Text en © 2020 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles An, Tian Zhang, Jing Liu, Yu‐Fei Wu, Yan‐Xiang Lian, Juan Wang, Ting‐Ye Hu, Yuan‐yuan Zhu, Jia‐jian Huang, Jiangpinghao Zhao, Dan‐Dan Mo, Fang‐Fang Gao, Si‐Hua Jiang, Guang‐Jian Combined analysis of whole‐exon sequencing and lncRNA sequencing in type 2 diabetes mellitus patients with obesity |
title | Combined analysis of whole‐exon sequencing and lncRNA sequencing in type 2 diabetes mellitus patients with obesity |
title_full | Combined analysis of whole‐exon sequencing and lncRNA sequencing in type 2 diabetes mellitus patients with obesity |
title_fullStr | Combined analysis of whole‐exon sequencing and lncRNA sequencing in type 2 diabetes mellitus patients with obesity |
title_full_unstemmed | Combined analysis of whole‐exon sequencing and lncRNA sequencing in type 2 diabetes mellitus patients with obesity |
title_short | Combined analysis of whole‐exon sequencing and lncRNA sequencing in type 2 diabetes mellitus patients with obesity |
title_sort | combined analysis of whole‐exon sequencing and lncrna sequencing in type 2 diabetes mellitus patients with obesity |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7028848/ https://www.ncbi.nlm.nih.gov/pubmed/31957265 http://dx.doi.org/10.1111/jcmm.14932 |
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