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Combined analysis of whole‐exon sequencing and lncRNA sequencing in type 2 diabetes mellitus patients with obesity

This study sought to find more exon mutation sites and lncRNA candidates associated with type 2 diabetes mellitus (T2DM) patients with obesity (O‐T2DM). We used O‐T2DM patients and healthy individuals to detect mutations in their peripheral blood by whole‐exon sequencing. And changes in lncRNA expre...

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Autores principales: An, Tian, Zhang, Jing, Liu, Yu‐Fei, Wu, Yan‐Xiang, Lian, Juan, Wang, Ting‐Ye, Hu, Yuan‐yuan, Zhu, Jia‐jian, Huang, Jiangpinghao, Zhao, Dan‐Dan, Mo, Fang‐Fang, Gao, Si‐Hua, Jiang, Guang‐Jian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7028848/
https://www.ncbi.nlm.nih.gov/pubmed/31957265
http://dx.doi.org/10.1111/jcmm.14932
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author An, Tian
Zhang, Jing
Liu, Yu‐Fei
Wu, Yan‐Xiang
Lian, Juan
Wang, Ting‐Ye
Hu, Yuan‐yuan
Zhu, Jia‐jian
Huang, Jiangpinghao
Zhao, Dan‐Dan
Mo, Fang‐Fang
Gao, Si‐Hua
Jiang, Guang‐Jian
author_facet An, Tian
Zhang, Jing
Liu, Yu‐Fei
Wu, Yan‐Xiang
Lian, Juan
Wang, Ting‐Ye
Hu, Yuan‐yuan
Zhu, Jia‐jian
Huang, Jiangpinghao
Zhao, Dan‐Dan
Mo, Fang‐Fang
Gao, Si‐Hua
Jiang, Guang‐Jian
author_sort An, Tian
collection PubMed
description This study sought to find more exon mutation sites and lncRNA candidates associated with type 2 diabetes mellitus (T2DM) patients with obesity (O‐T2DM). We used O‐T2DM patients and healthy individuals to detect mutations in their peripheral blood by whole‐exon sequencing. And changes in lncRNA expression caused by mutation sites were studied at the RNA level. Then, we performed GO analysis and KEGG pathway analysis. We found a total of 277 377 mutation sites between O‐T2DM and healthy individuals. Then, we performed a DNA‐RNA joint analysis. Based on the screening of harmful sites, 30 mutant genes shared in O‐T2DM patients were screened. At the RNA level, mutations of 106 differentially expressed genes were displayed. Finally, a consensus mutation site and differential expression consensus gene screening were performed. In the current study, the results revealed significant differences in exon sites in peripheral blood between O‐T2DM and healthy individuals, which may play an important role in the pathogenesis of O‐T2DM by affecting the expression of the corresponding lncRNA. This study provides clues to the molecular mechanisms of metabolic disorders in O‐T2DM patients at the DNA and RNA levels, as well as biomarkers of the risk of these disorders.
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spelling pubmed-70288482020-02-19 Combined analysis of whole‐exon sequencing and lncRNA sequencing in type 2 diabetes mellitus patients with obesity An, Tian Zhang, Jing Liu, Yu‐Fei Wu, Yan‐Xiang Lian, Juan Wang, Ting‐Ye Hu, Yuan‐yuan Zhu, Jia‐jian Huang, Jiangpinghao Zhao, Dan‐Dan Mo, Fang‐Fang Gao, Si‐Hua Jiang, Guang‐Jian J Cell Mol Med Original Articles This study sought to find more exon mutation sites and lncRNA candidates associated with type 2 diabetes mellitus (T2DM) patients with obesity (O‐T2DM). We used O‐T2DM patients and healthy individuals to detect mutations in their peripheral blood by whole‐exon sequencing. And changes in lncRNA expression caused by mutation sites were studied at the RNA level. Then, we performed GO analysis and KEGG pathway analysis. We found a total of 277 377 mutation sites between O‐T2DM and healthy individuals. Then, we performed a DNA‐RNA joint analysis. Based on the screening of harmful sites, 30 mutant genes shared in O‐T2DM patients were screened. At the RNA level, mutations of 106 differentially expressed genes were displayed. Finally, a consensus mutation site and differential expression consensus gene screening were performed. In the current study, the results revealed significant differences in exon sites in peripheral blood between O‐T2DM and healthy individuals, which may play an important role in the pathogenesis of O‐T2DM by affecting the expression of the corresponding lncRNA. This study provides clues to the molecular mechanisms of metabolic disorders in O‐T2DM patients at the DNA and RNA levels, as well as biomarkers of the risk of these disorders. John Wiley and Sons Inc. 2020-01-19 2020-02 /pmc/articles/PMC7028848/ /pubmed/31957265 http://dx.doi.org/10.1111/jcmm.14932 Text en © 2020 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
An, Tian
Zhang, Jing
Liu, Yu‐Fei
Wu, Yan‐Xiang
Lian, Juan
Wang, Ting‐Ye
Hu, Yuan‐yuan
Zhu, Jia‐jian
Huang, Jiangpinghao
Zhao, Dan‐Dan
Mo, Fang‐Fang
Gao, Si‐Hua
Jiang, Guang‐Jian
Combined analysis of whole‐exon sequencing and lncRNA sequencing in type 2 diabetes mellitus patients with obesity
title Combined analysis of whole‐exon sequencing and lncRNA sequencing in type 2 diabetes mellitus patients with obesity
title_full Combined analysis of whole‐exon sequencing and lncRNA sequencing in type 2 diabetes mellitus patients with obesity
title_fullStr Combined analysis of whole‐exon sequencing and lncRNA sequencing in type 2 diabetes mellitus patients with obesity
title_full_unstemmed Combined analysis of whole‐exon sequencing and lncRNA sequencing in type 2 diabetes mellitus patients with obesity
title_short Combined analysis of whole‐exon sequencing and lncRNA sequencing in type 2 diabetes mellitus patients with obesity
title_sort combined analysis of whole‐exon sequencing and lncrna sequencing in type 2 diabetes mellitus patients with obesity
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7028848/
https://www.ncbi.nlm.nih.gov/pubmed/31957265
http://dx.doi.org/10.1111/jcmm.14932
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