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Atomic structures and orbital energies of 61,489 crystal-forming organic molecules
Data science and machine learning in materials science require large datasets of technologically relevant molecules or materials. Currently, publicly available molecular datasets with realistic molecular geometries and spectral properties are rare. We here supply a diverse benchmark spectroscopy dat...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7029047/ https://www.ncbi.nlm.nih.gov/pubmed/32071311 http://dx.doi.org/10.1038/s41597-020-0385-y |
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author | Stuke, Annika Kunkel, Christian Golze, Dorothea Todorović, Milica Margraf, Johannes T. Reuter, Karsten Rinke, Patrick Oberhofer, Harald |
author_facet | Stuke, Annika Kunkel, Christian Golze, Dorothea Todorović, Milica Margraf, Johannes T. Reuter, Karsten Rinke, Patrick Oberhofer, Harald |
author_sort | Stuke, Annika |
collection | PubMed |
description | Data science and machine learning in materials science require large datasets of technologically relevant molecules or materials. Currently, publicly available molecular datasets with realistic molecular geometries and spectral properties are rare. We here supply a diverse benchmark spectroscopy dataset of 61,489 molecules extracted from organic crystals in the Cambridge Structural Database (CSD), denoted OE62. Molecular equilibrium geometries are reported at the Perdew-Burke-Ernzerhof (PBE) level of density functional theory (DFT) including van der Waals corrections for all 62 k molecules. For these geometries, OE62 supplies total energies and orbital eigenvalues at the PBE and the PBE hybrid (PBE0) functional level of DFT for all 62 k molecules in vacuum as well as at the PBE0 level for a subset of 30,876 molecules in (implicit) water. For 5,239 molecules in vacuum, the dataset provides quasiparticle energies computed with many-body perturbation theory in the G(0)W(0) approximation with a PBE0 starting point (denoted GW5000 in analogy to the GW100 benchmark set (M. van Setten et al. J. Chem. Theory Comput. 12, 5076 (2016))). |
format | Online Article Text |
id | pubmed-7029047 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-70290472020-03-04 Atomic structures and orbital energies of 61,489 crystal-forming organic molecules Stuke, Annika Kunkel, Christian Golze, Dorothea Todorović, Milica Margraf, Johannes T. Reuter, Karsten Rinke, Patrick Oberhofer, Harald Sci Data Data Descriptor Data science and machine learning in materials science require large datasets of technologically relevant molecules or materials. Currently, publicly available molecular datasets with realistic molecular geometries and spectral properties are rare. We here supply a diverse benchmark spectroscopy dataset of 61,489 molecules extracted from organic crystals in the Cambridge Structural Database (CSD), denoted OE62. Molecular equilibrium geometries are reported at the Perdew-Burke-Ernzerhof (PBE) level of density functional theory (DFT) including van der Waals corrections for all 62 k molecules. For these geometries, OE62 supplies total energies and orbital eigenvalues at the PBE and the PBE hybrid (PBE0) functional level of DFT for all 62 k molecules in vacuum as well as at the PBE0 level for a subset of 30,876 molecules in (implicit) water. For 5,239 molecules in vacuum, the dataset provides quasiparticle energies computed with many-body perturbation theory in the G(0)W(0) approximation with a PBE0 starting point (denoted GW5000 in analogy to the GW100 benchmark set (M. van Setten et al. J. Chem. Theory Comput. 12, 5076 (2016))). Nature Publishing Group UK 2020-02-18 /pmc/articles/PMC7029047/ /pubmed/32071311 http://dx.doi.org/10.1038/s41597-020-0385-y Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article. |
spellingShingle | Data Descriptor Stuke, Annika Kunkel, Christian Golze, Dorothea Todorović, Milica Margraf, Johannes T. Reuter, Karsten Rinke, Patrick Oberhofer, Harald Atomic structures and orbital energies of 61,489 crystal-forming organic molecules |
title | Atomic structures and orbital energies of 61,489 crystal-forming organic molecules |
title_full | Atomic structures and orbital energies of 61,489 crystal-forming organic molecules |
title_fullStr | Atomic structures and orbital energies of 61,489 crystal-forming organic molecules |
title_full_unstemmed | Atomic structures and orbital energies of 61,489 crystal-forming organic molecules |
title_short | Atomic structures and orbital energies of 61,489 crystal-forming organic molecules |
title_sort | atomic structures and orbital energies of 61,489 crystal-forming organic molecules |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7029047/ https://www.ncbi.nlm.nih.gov/pubmed/32071311 http://dx.doi.org/10.1038/s41597-020-0385-y |
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