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Optimal Multi-Stage Arrhythmia Classification Approach

Arrhythmia constitutes a problem with the rate or rhythm of the heartbeat, and an early diagnosis is essential for the timely inception of successful treatment. We have jointly optimized the entire multi-stage arrhythmia classification scheme based on 12-lead surface ECGs that attains the accuracy p...

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Autores principales: Zheng, Jianwei, Chu, Huimin, Struppa, Daniele, Zhang, Jianming, Yacoub, Sir Magdi, El-Askary, Hesham, Chang, Anthony, Ehwerhemuepha, Louis, Abudayyeh, Islam, Barrett, Alexander, Fu, Guohua, Yao, Hai, Li, Dongbo, Guo, Hangyuan, Rakovski, Cyril
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7031229/
https://www.ncbi.nlm.nih.gov/pubmed/32076033
http://dx.doi.org/10.1038/s41598-020-59821-7
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author Zheng, Jianwei
Chu, Huimin
Struppa, Daniele
Zhang, Jianming
Yacoub, Sir Magdi
El-Askary, Hesham
Chang, Anthony
Ehwerhemuepha, Louis
Abudayyeh, Islam
Barrett, Alexander
Fu, Guohua
Yao, Hai
Li, Dongbo
Guo, Hangyuan
Rakovski, Cyril
author_facet Zheng, Jianwei
Chu, Huimin
Struppa, Daniele
Zhang, Jianming
Yacoub, Sir Magdi
El-Askary, Hesham
Chang, Anthony
Ehwerhemuepha, Louis
Abudayyeh, Islam
Barrett, Alexander
Fu, Guohua
Yao, Hai
Li, Dongbo
Guo, Hangyuan
Rakovski, Cyril
author_sort Zheng, Jianwei
collection PubMed
description Arrhythmia constitutes a problem with the rate or rhythm of the heartbeat, and an early diagnosis is essential for the timely inception of successful treatment. We have jointly optimized the entire multi-stage arrhythmia classification scheme based on 12-lead surface ECGs that attains the accuracy performance level of professional cardiologists. The new approach is comprised of a three-step noise reduction stage, a novel feature extraction method and an optimal classification model with finely tuned hyperparameters. We carried out an exhaustive study comparing thousands of competing classification algorithms that were trained on our proprietary, large and expertly labeled dataset consisting of 12-lead ECGs from 40,258 patients with four arrhythmia classes: atrial fibrillation, general supraventricular tachycardia, sinus bradycardia and sinus rhythm including sinus irregularity rhythm. Our results show that the optimal approach consisted of Low Band Pass filter, Robust LOESS, Non Local Means smoothing, a proprietary feature extraction method based on percentiles of the empirical distribution of ratios of interval lengths and magnitudes of peaks and valleys, and Extreme Gradient Boosting Tree classifier, achieved an F(1)-Score of 0.988 on patients without additional cardiac conditions. The same noise reduction and feature extraction methods combined with Gradient Boosting Tree classifier achieved an F(1)-Score of 0.97 on patients with additional cardiac conditions. Our method achieved the highest classification accuracy (average 10-fold cross-validation F(1)-Score of 0.992) using an external validation data, MIT-BIH arrhythmia database. The proposed optimal multi-stage arrhythmia classification approach can dramatically benefit automatic ECG data analysis by providing cardiologist level accuracy and robust compatibility with various ECG data sources.
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spelling pubmed-70312292020-02-26 Optimal Multi-Stage Arrhythmia Classification Approach Zheng, Jianwei Chu, Huimin Struppa, Daniele Zhang, Jianming Yacoub, Sir Magdi El-Askary, Hesham Chang, Anthony Ehwerhemuepha, Louis Abudayyeh, Islam Barrett, Alexander Fu, Guohua Yao, Hai Li, Dongbo Guo, Hangyuan Rakovski, Cyril Sci Rep Article Arrhythmia constitutes a problem with the rate or rhythm of the heartbeat, and an early diagnosis is essential for the timely inception of successful treatment. We have jointly optimized the entire multi-stage arrhythmia classification scheme based on 12-lead surface ECGs that attains the accuracy performance level of professional cardiologists. The new approach is comprised of a three-step noise reduction stage, a novel feature extraction method and an optimal classification model with finely tuned hyperparameters. We carried out an exhaustive study comparing thousands of competing classification algorithms that were trained on our proprietary, large and expertly labeled dataset consisting of 12-lead ECGs from 40,258 patients with four arrhythmia classes: atrial fibrillation, general supraventricular tachycardia, sinus bradycardia and sinus rhythm including sinus irregularity rhythm. Our results show that the optimal approach consisted of Low Band Pass filter, Robust LOESS, Non Local Means smoothing, a proprietary feature extraction method based on percentiles of the empirical distribution of ratios of interval lengths and magnitudes of peaks and valleys, and Extreme Gradient Boosting Tree classifier, achieved an F(1)-Score of 0.988 on patients without additional cardiac conditions. The same noise reduction and feature extraction methods combined with Gradient Boosting Tree classifier achieved an F(1)-Score of 0.97 on patients with additional cardiac conditions. Our method achieved the highest classification accuracy (average 10-fold cross-validation F(1)-Score of 0.992) using an external validation data, MIT-BIH arrhythmia database. The proposed optimal multi-stage arrhythmia classification approach can dramatically benefit automatic ECG data analysis by providing cardiologist level accuracy and robust compatibility with various ECG data sources. Nature Publishing Group UK 2020-02-19 /pmc/articles/PMC7031229/ /pubmed/32076033 http://dx.doi.org/10.1038/s41598-020-59821-7 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Zheng, Jianwei
Chu, Huimin
Struppa, Daniele
Zhang, Jianming
Yacoub, Sir Magdi
El-Askary, Hesham
Chang, Anthony
Ehwerhemuepha, Louis
Abudayyeh, Islam
Barrett, Alexander
Fu, Guohua
Yao, Hai
Li, Dongbo
Guo, Hangyuan
Rakovski, Cyril
Optimal Multi-Stage Arrhythmia Classification Approach
title Optimal Multi-Stage Arrhythmia Classification Approach
title_full Optimal Multi-Stage Arrhythmia Classification Approach
title_fullStr Optimal Multi-Stage Arrhythmia Classification Approach
title_full_unstemmed Optimal Multi-Stage Arrhythmia Classification Approach
title_short Optimal Multi-Stage Arrhythmia Classification Approach
title_sort optimal multi-stage arrhythmia classification approach
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7031229/
https://www.ncbi.nlm.nih.gov/pubmed/32076033
http://dx.doi.org/10.1038/s41598-020-59821-7
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