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Clonal Hematopoiesis From Next Generation Sequencing of Plasma From a Patient With Lung Adenocarcinoma: A Case Report

Reliable and accurate next generation sequencing (NGS) technologies are important in precision medicine. Analysis using currently available NGS genomic tests is conducted on cancer-derived DNA collected from tumor tissue, blood, or both. Clonal hematopoiesis (CH) produces a detectable somatic clonal...

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Autores principales: Ito, Munehiro, Fujiwara, Yutaka, Kubo, Takashi, Matsushita, Hiromichi, Kumamoto, Tadashi, Suzuki, Tatsuya, Sunami, Kuniko, Yamamoto, Noboru, Kohno, Takashi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7031249/
https://www.ncbi.nlm.nih.gov/pubmed/32117761
http://dx.doi.org/10.3389/fonc.2020.00113
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author Ito, Munehiro
Fujiwara, Yutaka
Kubo, Takashi
Matsushita, Hiromichi
Kumamoto, Tadashi
Suzuki, Tatsuya
Sunami, Kuniko
Yamamoto, Noboru
Kohno, Takashi
author_facet Ito, Munehiro
Fujiwara, Yutaka
Kubo, Takashi
Matsushita, Hiromichi
Kumamoto, Tadashi
Suzuki, Tatsuya
Sunami, Kuniko
Yamamoto, Noboru
Kohno, Takashi
author_sort Ito, Munehiro
collection PubMed
description Reliable and accurate next generation sequencing (NGS) technologies are important in precision medicine. Analysis using currently available NGS genomic tests is conducted on cancer-derived DNA collected from tumor tissue, blood, or both. Clonal hematopoiesis (CH) produces a detectable somatic clonal mutation that is commonly associated with clonal expansion of hematopoietic cells with age and genomic analysis of blood samples can be used to detect CH. A 74-year-old Korean male had lung adenocarcinoma with a metastasis to the left scapula. He underwent palliative radiotherapy to the left scapula and received multi-line chemotherapies. After disease progression, he underwent re-biopsy of the metastatic tumor tissue from lung cancer and concomitant blood sampling. NGS genomic testing revealed no significant genomic mutation in the tumor tissue DNA but showed the TP53 mutation C135Y in peripheral blood DNA. To investigate the discordance between the genotyping results in tumor tissue and blood, we tested for the TP53 mutation using a target sequencing test in blood and normal oral mucosa. The TP53 mutation C135Y was only detected in the blood sample, confirming the presence of TP53-mutated CH. We should be aware of different characteristics in NGS genomic testing including sample type such as tumor, blood, or paired specimens. Performing genomic testing on paired tumor and blood samples is effective for discriminating mutations derived from CH from germline mutations and somatic mutations in tumor cells.
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spelling pubmed-70312492020-02-28 Clonal Hematopoiesis From Next Generation Sequencing of Plasma From a Patient With Lung Adenocarcinoma: A Case Report Ito, Munehiro Fujiwara, Yutaka Kubo, Takashi Matsushita, Hiromichi Kumamoto, Tadashi Suzuki, Tatsuya Sunami, Kuniko Yamamoto, Noboru Kohno, Takashi Front Oncol Oncology Reliable and accurate next generation sequencing (NGS) technologies are important in precision medicine. Analysis using currently available NGS genomic tests is conducted on cancer-derived DNA collected from tumor tissue, blood, or both. Clonal hematopoiesis (CH) produces a detectable somatic clonal mutation that is commonly associated with clonal expansion of hematopoietic cells with age and genomic analysis of blood samples can be used to detect CH. A 74-year-old Korean male had lung adenocarcinoma with a metastasis to the left scapula. He underwent palliative radiotherapy to the left scapula and received multi-line chemotherapies. After disease progression, he underwent re-biopsy of the metastatic tumor tissue from lung cancer and concomitant blood sampling. NGS genomic testing revealed no significant genomic mutation in the tumor tissue DNA but showed the TP53 mutation C135Y in peripheral blood DNA. To investigate the discordance between the genotyping results in tumor tissue and blood, we tested for the TP53 mutation using a target sequencing test in blood and normal oral mucosa. The TP53 mutation C135Y was only detected in the blood sample, confirming the presence of TP53-mutated CH. We should be aware of different characteristics in NGS genomic testing including sample type such as tumor, blood, or paired specimens. Performing genomic testing on paired tumor and blood samples is effective for discriminating mutations derived from CH from germline mutations and somatic mutations in tumor cells. Frontiers Media S.A. 2020-02-13 /pmc/articles/PMC7031249/ /pubmed/32117761 http://dx.doi.org/10.3389/fonc.2020.00113 Text en Copyright © 2020 Ito, Fujiwara, Kubo, Matsushita, Kumamoto, Suzuki, Sunami, Yamamoto and Kohno. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Ito, Munehiro
Fujiwara, Yutaka
Kubo, Takashi
Matsushita, Hiromichi
Kumamoto, Tadashi
Suzuki, Tatsuya
Sunami, Kuniko
Yamamoto, Noboru
Kohno, Takashi
Clonal Hematopoiesis From Next Generation Sequencing of Plasma From a Patient With Lung Adenocarcinoma: A Case Report
title Clonal Hematopoiesis From Next Generation Sequencing of Plasma From a Patient With Lung Adenocarcinoma: A Case Report
title_full Clonal Hematopoiesis From Next Generation Sequencing of Plasma From a Patient With Lung Adenocarcinoma: A Case Report
title_fullStr Clonal Hematopoiesis From Next Generation Sequencing of Plasma From a Patient With Lung Adenocarcinoma: A Case Report
title_full_unstemmed Clonal Hematopoiesis From Next Generation Sequencing of Plasma From a Patient With Lung Adenocarcinoma: A Case Report
title_short Clonal Hematopoiesis From Next Generation Sequencing of Plasma From a Patient With Lung Adenocarcinoma: A Case Report
title_sort clonal hematopoiesis from next generation sequencing of plasma from a patient with lung adenocarcinoma: a case report
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7031249/
https://www.ncbi.nlm.nih.gov/pubmed/32117761
http://dx.doi.org/10.3389/fonc.2020.00113
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