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Association of GWAS‐supported noncoding area loci rs404860, rs3117098, and rs7775228 with asthma in Chinese Zhuang population

BACKGROUND: Asthma is a complicated and polygenic inheritance disease, and its prevalence increases worldwide. Recent genome‐wide association studies (GWASs) identified a significant association of single nucleotide polymorphism with asthma in the Japanese population. This study aimed to examine the...

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Autores principales: Liang, Si‐Qiao, Deng, Jing‐Min, Wei, Xuan, Chen, Zhang‐Rong, Yang, Mei‐Ling, Qin, Hua‐jiao, Zhang, Jian‐quan, He, Zhi‐yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7031573/
https://www.ncbi.nlm.nih.gov/pubmed/31605414
http://dx.doi.org/10.1002/jcla.23066
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author Liang, Si‐Qiao
Deng, Jing‐Min
Wei, Xuan
Chen, Zhang‐Rong
Yang, Mei‐Ling
Qin, Hua‐jiao
Zhang, Jian‐quan
He, Zhi‐yi
author_facet Liang, Si‐Qiao
Deng, Jing‐Min
Wei, Xuan
Chen, Zhang‐Rong
Yang, Mei‐Ling
Qin, Hua‐jiao
Zhang, Jian‐quan
He, Zhi‐yi
author_sort Liang, Si‐Qiao
collection PubMed
description BACKGROUND: Asthma is a complicated and polygenic inheritance disease, and its prevalence increases worldwide. Recent genome‐wide association studies (GWASs) identified a significant association of single nucleotide polymorphism with asthma in the Japanese population. This study aimed to examine the association of GWAS‐supported noncoding area loci, namely rs404860, rs3117098, and rs7775228, with asthma in Chinese Zhuang population. METHODS: A case‐control study involving 223 individuals, comprising 123 patients with asthma and 100 healthy controls, was conducted. Genotypes were determined by polymerase chain reaction (PCR)/ligase detection reaction assay. The association between gene polymorphisms and asthma risk was calculated by logistic regression analysis using different genetic models through comparisons of alleles (A vs a), homozygote genotypes (AA vs aa), heterozygote genotypes (Aa vs aa), dominant models (AA+Aa vs aa), and recessive models (AA vs. Aa+aa). RESULTS: The distribution of the genotype frequency of rs3117098 was statistically different between the case and control groups. For rs3117098, significant associations were observed through comparisons of alleles (OR: 1.832, 95% CI: 1.048‐3.204, P = .034) and dominant models (OR: 2.065, 95% CI: 1.001‐4.260, P = .050). The statistical analysis showed no significant difference for loci rs404860 and rs7775228 between patients with asthma and controls. CONCLUSION: rs3117098 may be the risk factor for asthma in Chinese Zhuang population.
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spelling pubmed-70315732020-02-27 Association of GWAS‐supported noncoding area loci rs404860, rs3117098, and rs7775228 with asthma in Chinese Zhuang population Liang, Si‐Qiao Deng, Jing‐Min Wei, Xuan Chen, Zhang‐Rong Yang, Mei‐Ling Qin, Hua‐jiao Zhang, Jian‐quan He, Zhi‐yi J Clin Lab Anal Research Articles BACKGROUND: Asthma is a complicated and polygenic inheritance disease, and its prevalence increases worldwide. Recent genome‐wide association studies (GWASs) identified a significant association of single nucleotide polymorphism with asthma in the Japanese population. This study aimed to examine the association of GWAS‐supported noncoding area loci, namely rs404860, rs3117098, and rs7775228, with asthma in Chinese Zhuang population. METHODS: A case‐control study involving 223 individuals, comprising 123 patients with asthma and 100 healthy controls, was conducted. Genotypes were determined by polymerase chain reaction (PCR)/ligase detection reaction assay. The association between gene polymorphisms and asthma risk was calculated by logistic regression analysis using different genetic models through comparisons of alleles (A vs a), homozygote genotypes (AA vs aa), heterozygote genotypes (Aa vs aa), dominant models (AA+Aa vs aa), and recessive models (AA vs. Aa+aa). RESULTS: The distribution of the genotype frequency of rs3117098 was statistically different between the case and control groups. For rs3117098, significant associations were observed through comparisons of alleles (OR: 1.832, 95% CI: 1.048‐3.204, P = .034) and dominant models (OR: 2.065, 95% CI: 1.001‐4.260, P = .050). The statistical analysis showed no significant difference for loci rs404860 and rs7775228 between patients with asthma and controls. CONCLUSION: rs3117098 may be the risk factor for asthma in Chinese Zhuang population. John Wiley and Sons Inc. 2019-10-12 /pmc/articles/PMC7031573/ /pubmed/31605414 http://dx.doi.org/10.1002/jcla.23066 Text en © 2019 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Liang, Si‐Qiao
Deng, Jing‐Min
Wei, Xuan
Chen, Zhang‐Rong
Yang, Mei‐Ling
Qin, Hua‐jiao
Zhang, Jian‐quan
He, Zhi‐yi
Association of GWAS‐supported noncoding area loci rs404860, rs3117098, and rs7775228 with asthma in Chinese Zhuang population
title Association of GWAS‐supported noncoding area loci rs404860, rs3117098, and rs7775228 with asthma in Chinese Zhuang population
title_full Association of GWAS‐supported noncoding area loci rs404860, rs3117098, and rs7775228 with asthma in Chinese Zhuang population
title_fullStr Association of GWAS‐supported noncoding area loci rs404860, rs3117098, and rs7775228 with asthma in Chinese Zhuang population
title_full_unstemmed Association of GWAS‐supported noncoding area loci rs404860, rs3117098, and rs7775228 with asthma in Chinese Zhuang population
title_short Association of GWAS‐supported noncoding area loci rs404860, rs3117098, and rs7775228 with asthma in Chinese Zhuang population
title_sort association of gwas‐supported noncoding area loci rs404860, rs3117098, and rs7775228 with asthma in chinese zhuang population
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7031573/
https://www.ncbi.nlm.nih.gov/pubmed/31605414
http://dx.doi.org/10.1002/jcla.23066
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