Cargando…
Association of GWAS‐supported noncoding area loci rs404860, rs3117098, and rs7775228 with asthma in Chinese Zhuang population
BACKGROUND: Asthma is a complicated and polygenic inheritance disease, and its prevalence increases worldwide. Recent genome‐wide association studies (GWASs) identified a significant association of single nucleotide polymorphism with asthma in the Japanese population. This study aimed to examine the...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7031573/ https://www.ncbi.nlm.nih.gov/pubmed/31605414 http://dx.doi.org/10.1002/jcla.23066 |
_version_ | 1783499404138774528 |
---|---|
author | Liang, Si‐Qiao Deng, Jing‐Min Wei, Xuan Chen, Zhang‐Rong Yang, Mei‐Ling Qin, Hua‐jiao Zhang, Jian‐quan He, Zhi‐yi |
author_facet | Liang, Si‐Qiao Deng, Jing‐Min Wei, Xuan Chen, Zhang‐Rong Yang, Mei‐Ling Qin, Hua‐jiao Zhang, Jian‐quan He, Zhi‐yi |
author_sort | Liang, Si‐Qiao |
collection | PubMed |
description | BACKGROUND: Asthma is a complicated and polygenic inheritance disease, and its prevalence increases worldwide. Recent genome‐wide association studies (GWASs) identified a significant association of single nucleotide polymorphism with asthma in the Japanese population. This study aimed to examine the association of GWAS‐supported noncoding area loci, namely rs404860, rs3117098, and rs7775228, with asthma in Chinese Zhuang population. METHODS: A case‐control study involving 223 individuals, comprising 123 patients with asthma and 100 healthy controls, was conducted. Genotypes were determined by polymerase chain reaction (PCR)/ligase detection reaction assay. The association between gene polymorphisms and asthma risk was calculated by logistic regression analysis using different genetic models through comparisons of alleles (A vs a), homozygote genotypes (AA vs aa), heterozygote genotypes (Aa vs aa), dominant models (AA+Aa vs aa), and recessive models (AA vs. Aa+aa). RESULTS: The distribution of the genotype frequency of rs3117098 was statistically different between the case and control groups. For rs3117098, significant associations were observed through comparisons of alleles (OR: 1.832, 95% CI: 1.048‐3.204, P = .034) and dominant models (OR: 2.065, 95% CI: 1.001‐4.260, P = .050). The statistical analysis showed no significant difference for loci rs404860 and rs7775228 between patients with asthma and controls. CONCLUSION: rs3117098 may be the risk factor for asthma in Chinese Zhuang population. |
format | Online Article Text |
id | pubmed-7031573 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-70315732020-02-27 Association of GWAS‐supported noncoding area loci rs404860, rs3117098, and rs7775228 with asthma in Chinese Zhuang population Liang, Si‐Qiao Deng, Jing‐Min Wei, Xuan Chen, Zhang‐Rong Yang, Mei‐Ling Qin, Hua‐jiao Zhang, Jian‐quan He, Zhi‐yi J Clin Lab Anal Research Articles BACKGROUND: Asthma is a complicated and polygenic inheritance disease, and its prevalence increases worldwide. Recent genome‐wide association studies (GWASs) identified a significant association of single nucleotide polymorphism with asthma in the Japanese population. This study aimed to examine the association of GWAS‐supported noncoding area loci, namely rs404860, rs3117098, and rs7775228, with asthma in Chinese Zhuang population. METHODS: A case‐control study involving 223 individuals, comprising 123 patients with asthma and 100 healthy controls, was conducted. Genotypes were determined by polymerase chain reaction (PCR)/ligase detection reaction assay. The association between gene polymorphisms and asthma risk was calculated by logistic regression analysis using different genetic models through comparisons of alleles (A vs a), homozygote genotypes (AA vs aa), heterozygote genotypes (Aa vs aa), dominant models (AA+Aa vs aa), and recessive models (AA vs. Aa+aa). RESULTS: The distribution of the genotype frequency of rs3117098 was statistically different between the case and control groups. For rs3117098, significant associations were observed through comparisons of alleles (OR: 1.832, 95% CI: 1.048‐3.204, P = .034) and dominant models (OR: 2.065, 95% CI: 1.001‐4.260, P = .050). The statistical analysis showed no significant difference for loci rs404860 and rs7775228 between patients with asthma and controls. CONCLUSION: rs3117098 may be the risk factor for asthma in Chinese Zhuang population. John Wiley and Sons Inc. 2019-10-12 /pmc/articles/PMC7031573/ /pubmed/31605414 http://dx.doi.org/10.1002/jcla.23066 Text en © 2019 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Liang, Si‐Qiao Deng, Jing‐Min Wei, Xuan Chen, Zhang‐Rong Yang, Mei‐Ling Qin, Hua‐jiao Zhang, Jian‐quan He, Zhi‐yi Association of GWAS‐supported noncoding area loci rs404860, rs3117098, and rs7775228 with asthma in Chinese Zhuang population |
title | Association of GWAS‐supported noncoding area loci rs404860, rs3117098, and rs7775228 with asthma in Chinese Zhuang population |
title_full | Association of GWAS‐supported noncoding area loci rs404860, rs3117098, and rs7775228 with asthma in Chinese Zhuang population |
title_fullStr | Association of GWAS‐supported noncoding area loci rs404860, rs3117098, and rs7775228 with asthma in Chinese Zhuang population |
title_full_unstemmed | Association of GWAS‐supported noncoding area loci rs404860, rs3117098, and rs7775228 with asthma in Chinese Zhuang population |
title_short | Association of GWAS‐supported noncoding area loci rs404860, rs3117098, and rs7775228 with asthma in Chinese Zhuang population |
title_sort | association of gwas‐supported noncoding area loci rs404860, rs3117098, and rs7775228 with asthma in chinese zhuang population |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7031573/ https://www.ncbi.nlm.nih.gov/pubmed/31605414 http://dx.doi.org/10.1002/jcla.23066 |
work_keys_str_mv | AT liangsiqiao associationofgwassupportednoncodingarealocirs404860rs3117098andrs7775228withasthmainchinesezhuangpopulation AT dengjingmin associationofgwassupportednoncodingarealocirs404860rs3117098andrs7775228withasthmainchinesezhuangpopulation AT weixuan associationofgwassupportednoncodingarealocirs404860rs3117098andrs7775228withasthmainchinesezhuangpopulation AT chenzhangrong associationofgwassupportednoncodingarealocirs404860rs3117098andrs7775228withasthmainchinesezhuangpopulation AT yangmeiling associationofgwassupportednoncodingarealocirs404860rs3117098andrs7775228withasthmainchinesezhuangpopulation AT qinhuajiao associationofgwassupportednoncodingarealocirs404860rs3117098andrs7775228withasthmainchinesezhuangpopulation AT zhangjianquan associationofgwassupportednoncodingarealocirs404860rs3117098andrs7775228withasthmainchinesezhuangpopulation AT hezhiyi associationofgwassupportednoncodingarealocirs404860rs3117098andrs7775228withasthmainchinesezhuangpopulation |