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Physically-interpretable classification of biological network dynamics for complex collective motions

Understanding biological network dynamics is a fundamental issue in various scientific and engineering fields. Network theory is capable of revealing the relationship between elements and their propagation; however, for complex collective motions, the network properties often transiently and complex...

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Detalles Bibliográficos
Autores principales: Fujii, Keisuke, Takeishi, Naoya, Hojo, Motokazu, Inaba, Yuki, Kawahara, Yoshinobu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7033192/
https://www.ncbi.nlm.nih.gov/pubmed/32080208
http://dx.doi.org/10.1038/s41598-020-58064-w
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author Fujii, Keisuke
Takeishi, Naoya
Hojo, Motokazu
Inaba, Yuki
Kawahara, Yoshinobu
author_facet Fujii, Keisuke
Takeishi, Naoya
Hojo, Motokazu
Inaba, Yuki
Kawahara, Yoshinobu
author_sort Fujii, Keisuke
collection PubMed
description Understanding biological network dynamics is a fundamental issue in various scientific and engineering fields. Network theory is capable of revealing the relationship between elements and their propagation; however, for complex collective motions, the network properties often transiently and complexly change. A fundamental question addressed here pertains to the classification of collective motion network based on physically-interpretable dynamical properties. Here we apply a data-driven spectral analysis called graph dynamic mode decomposition, which obtains the dynamical properties for collective motion classification. Using a ballgame as an example, we classified the strategic collective motions in different global behaviours and discovered that, in addition to the physical properties, the contextual node information was critical for classification. Furthermore, we discovered the label-specific stronger spectra in the relationship among the nearest agents, providing physical and semantic interpretations. Our approach contributes to the understanding of principles of biological complex network dynamics from the perspective of nonlinear dynamical systems.
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spelling pubmed-70331922020-02-28 Physically-interpretable classification of biological network dynamics for complex collective motions Fujii, Keisuke Takeishi, Naoya Hojo, Motokazu Inaba, Yuki Kawahara, Yoshinobu Sci Rep Article Understanding biological network dynamics is a fundamental issue in various scientific and engineering fields. Network theory is capable of revealing the relationship between elements and their propagation; however, for complex collective motions, the network properties often transiently and complexly change. A fundamental question addressed here pertains to the classification of collective motion network based on physically-interpretable dynamical properties. Here we apply a data-driven spectral analysis called graph dynamic mode decomposition, which obtains the dynamical properties for collective motion classification. Using a ballgame as an example, we classified the strategic collective motions in different global behaviours and discovered that, in addition to the physical properties, the contextual node information was critical for classification. Furthermore, we discovered the label-specific stronger spectra in the relationship among the nearest agents, providing physical and semantic interpretations. Our approach contributes to the understanding of principles of biological complex network dynamics from the perspective of nonlinear dynamical systems. Nature Publishing Group UK 2020-02-20 /pmc/articles/PMC7033192/ /pubmed/32080208 http://dx.doi.org/10.1038/s41598-020-58064-w Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Fujii, Keisuke
Takeishi, Naoya
Hojo, Motokazu
Inaba, Yuki
Kawahara, Yoshinobu
Physically-interpretable classification of biological network dynamics for complex collective motions
title Physically-interpretable classification of biological network dynamics for complex collective motions
title_full Physically-interpretable classification of biological network dynamics for complex collective motions
title_fullStr Physically-interpretable classification of biological network dynamics for complex collective motions
title_full_unstemmed Physically-interpretable classification of biological network dynamics for complex collective motions
title_short Physically-interpretable classification of biological network dynamics for complex collective motions
title_sort physically-interpretable classification of biological network dynamics for complex collective motions
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7033192/
https://www.ncbi.nlm.nih.gov/pubmed/32080208
http://dx.doi.org/10.1038/s41598-020-58064-w
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