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Normal mode analysis of a relaxation process with Bayesian inference
Measurements of relaxation processes are essential in many fields, including nonlinear optics. Relaxation processes provide many insights into atomic/molecular structures and the kinetics and mechanisms of chemical reactions. For the analysis of these processes, the extraction of modes that are spec...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7033694/ https://www.ncbi.nlm.nih.gov/pubmed/32128007 http://dx.doi.org/10.1080/14686996.2020.1713703 |
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author | Sakata, Itsushi Nagano, Yoshihiro Igarashi, Yasuhiko Murata, Shin Mizoguchi, Kohji Akai, Ichiro Okada, Masato |
author_facet | Sakata, Itsushi Nagano, Yoshihiro Igarashi, Yasuhiko Murata, Shin Mizoguchi, Kohji Akai, Ichiro Okada, Masato |
author_sort | Sakata, Itsushi |
collection | PubMed |
description | Measurements of relaxation processes are essential in many fields, including nonlinear optics. Relaxation processes provide many insights into atomic/molecular structures and the kinetics and mechanisms of chemical reactions. For the analysis of these processes, the extraction of modes that are specific to the phenomenon of interest (normal modes) is unavoidable. In this study we propose a framework to systematically extract normal modes from the viewpoint of model selection with Bayesian inference. Our approach consists of a well-known method called sparsity-promoting dynamic mode decomposition, which decomposes a mixture of damped oscillations, and the Bayesian model selection framework. We numerically verify the performance of our proposed method by using coherent phonon signals of a bismuth polycrystal and virtual data as typical examples of relaxation processes. Our method succeeds in extracting the normal modes even from experimental data with strong backgrounds. Moreover, the selected set of modes is robust to observation noise, and our method can estimate the level of observation noise. From these observations, our method is applicable to normal mode analysis, especially for data with strong backgrounds. |
format | Online Article Text |
id | pubmed-7033694 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-70336942020-03-03 Normal mode analysis of a relaxation process with Bayesian inference Sakata, Itsushi Nagano, Yoshihiro Igarashi, Yasuhiko Murata, Shin Mizoguchi, Kohji Akai, Ichiro Okada, Masato Sci Technol Adv Mater New topics/Others Measurements of relaxation processes are essential in many fields, including nonlinear optics. Relaxation processes provide many insights into atomic/molecular structures and the kinetics and mechanisms of chemical reactions. For the analysis of these processes, the extraction of modes that are specific to the phenomenon of interest (normal modes) is unavoidable. In this study we propose a framework to systematically extract normal modes from the viewpoint of model selection with Bayesian inference. Our approach consists of a well-known method called sparsity-promoting dynamic mode decomposition, which decomposes a mixture of damped oscillations, and the Bayesian model selection framework. We numerically verify the performance of our proposed method by using coherent phonon signals of a bismuth polycrystal and virtual data as typical examples of relaxation processes. Our method succeeds in extracting the normal modes even from experimental data with strong backgrounds. Moreover, the selected set of modes is robust to observation noise, and our method can estimate the level of observation noise. From these observations, our method is applicable to normal mode analysis, especially for data with strong backgrounds. Taylor & Francis 2020-02-10 /pmc/articles/PMC7033694/ /pubmed/32128007 http://dx.doi.org/10.1080/14686996.2020.1713703 Text en © 2020 The Author(s). Published by National Institute for Materials Science in partnership with Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | New topics/Others Sakata, Itsushi Nagano, Yoshihiro Igarashi, Yasuhiko Murata, Shin Mizoguchi, Kohji Akai, Ichiro Okada, Masato Normal mode analysis of a relaxation process with Bayesian inference |
title | Normal mode analysis of a relaxation process with Bayesian inference |
title_full | Normal mode analysis of a relaxation process with Bayesian inference |
title_fullStr | Normal mode analysis of a relaxation process with Bayesian inference |
title_full_unstemmed | Normal mode analysis of a relaxation process with Bayesian inference |
title_short | Normal mode analysis of a relaxation process with Bayesian inference |
title_sort | normal mode analysis of a relaxation process with bayesian inference |
topic | New topics/Others |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7033694/ https://www.ncbi.nlm.nih.gov/pubmed/32128007 http://dx.doi.org/10.1080/14686996.2020.1713703 |
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