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Development and characterization of novel SSR markers in the endangered endemic species Ferula sadleriana

PREMISE: Ferula sadleriana (Apiaceae) is a polycarpic, perennial herb with a very limited range and small populations. It is listed as “endangered” on the IUCN Red List of Threatened Species. Microsatellite markers can contribute to conservation efforts by allowing the study of the genetic structure...

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Autores principales: Malkócs, Tamás, Laczkó, Levente, Bereczki, Judit, Meglécz, Emese, Szövényi, Péter, Sramkó, Gábor
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7035428/
https://www.ncbi.nlm.nih.gov/pubmed/32110501
http://dx.doi.org/10.1002/aps3.11321
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author Malkócs, Tamás
Laczkó, Levente
Bereczki, Judit
Meglécz, Emese
Szövényi, Péter
Sramkó, Gábor
author_facet Malkócs, Tamás
Laczkó, Levente
Bereczki, Judit
Meglécz, Emese
Szövényi, Péter
Sramkó, Gábor
author_sort Malkócs, Tamás
collection PubMed
description PREMISE: Ferula sadleriana (Apiaceae) is a polycarpic, perennial herb with a very limited range and small populations. It is listed as “endangered” on the IUCN Red List of Threatened Species. Microsatellite markers can contribute to conservation efforts by allowing the study of the genetic structure of its shrinking populations. METHODS AND RESULTS: We used a microsatellite‐enriched library combined with an Illumina sequencing approach to develop simple sequence repeat markers in our target species. Out of 44 tested primer pairs, 22 provided specific products, and 13 showed heterologous amplification in the target species. Cross‐species amplification was achieved at 20 and 19 loci in two congeneric species, F. soongarica and F. tatarica, respectively. CONCLUSIONS: The primers described here are the first tools that enable the population genetic characterization of F. sadleriana. Our results suggest a wider applicability in the genus Ferula.
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spelling pubmed-70354282020-02-27 Development and characterization of novel SSR markers in the endangered endemic species Ferula sadleriana Malkócs, Tamás Laczkó, Levente Bereczki, Judit Meglécz, Emese Szövényi, Péter Sramkó, Gábor Appl Plant Sci Primer Notes PREMISE: Ferula sadleriana (Apiaceae) is a polycarpic, perennial herb with a very limited range and small populations. It is listed as “endangered” on the IUCN Red List of Threatened Species. Microsatellite markers can contribute to conservation efforts by allowing the study of the genetic structure of its shrinking populations. METHODS AND RESULTS: We used a microsatellite‐enriched library combined with an Illumina sequencing approach to develop simple sequence repeat markers in our target species. Out of 44 tested primer pairs, 22 provided specific products, and 13 showed heterologous amplification in the target species. Cross‐species amplification was achieved at 20 and 19 loci in two congeneric species, F. soongarica and F. tatarica, respectively. CONCLUSIONS: The primers described here are the first tools that enable the population genetic characterization of F. sadleriana. Our results suggest a wider applicability in the genus Ferula. John Wiley and Sons Inc. 2020-02-11 /pmc/articles/PMC7035428/ /pubmed/32110501 http://dx.doi.org/10.1002/aps3.11321 Text en © 2020 Malkócs et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Primer Notes
Malkócs, Tamás
Laczkó, Levente
Bereczki, Judit
Meglécz, Emese
Szövényi, Péter
Sramkó, Gábor
Development and characterization of novel SSR markers in the endangered endemic species Ferula sadleriana
title Development and characterization of novel SSR markers in the endangered endemic species Ferula sadleriana
title_full Development and characterization of novel SSR markers in the endangered endemic species Ferula sadleriana
title_fullStr Development and characterization of novel SSR markers in the endangered endemic species Ferula sadleriana
title_full_unstemmed Development and characterization of novel SSR markers in the endangered endemic species Ferula sadleriana
title_short Development and characterization of novel SSR markers in the endangered endemic species Ferula sadleriana
title_sort development and characterization of novel ssr markers in the endangered endemic species ferula sadleriana
topic Primer Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7035428/
https://www.ncbi.nlm.nih.gov/pubmed/32110501
http://dx.doi.org/10.1002/aps3.11321
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