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Development and characterization of novel SSR markers in the endangered endemic species Ferula sadleriana
PREMISE: Ferula sadleriana (Apiaceae) is a polycarpic, perennial herb with a very limited range and small populations. It is listed as “endangered” on the IUCN Red List of Threatened Species. Microsatellite markers can contribute to conservation efforts by allowing the study of the genetic structure...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7035428/ https://www.ncbi.nlm.nih.gov/pubmed/32110501 http://dx.doi.org/10.1002/aps3.11321 |
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author | Malkócs, Tamás Laczkó, Levente Bereczki, Judit Meglécz, Emese Szövényi, Péter Sramkó, Gábor |
author_facet | Malkócs, Tamás Laczkó, Levente Bereczki, Judit Meglécz, Emese Szövényi, Péter Sramkó, Gábor |
author_sort | Malkócs, Tamás |
collection | PubMed |
description | PREMISE: Ferula sadleriana (Apiaceae) is a polycarpic, perennial herb with a very limited range and small populations. It is listed as “endangered” on the IUCN Red List of Threatened Species. Microsatellite markers can contribute to conservation efforts by allowing the study of the genetic structure of its shrinking populations. METHODS AND RESULTS: We used a microsatellite‐enriched library combined with an Illumina sequencing approach to develop simple sequence repeat markers in our target species. Out of 44 tested primer pairs, 22 provided specific products, and 13 showed heterologous amplification in the target species. Cross‐species amplification was achieved at 20 and 19 loci in two congeneric species, F. soongarica and F. tatarica, respectively. CONCLUSIONS: The primers described here are the first tools that enable the population genetic characterization of F. sadleriana. Our results suggest a wider applicability in the genus Ferula. |
format | Online Article Text |
id | pubmed-7035428 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-70354282020-02-27 Development and characterization of novel SSR markers in the endangered endemic species Ferula sadleriana Malkócs, Tamás Laczkó, Levente Bereczki, Judit Meglécz, Emese Szövényi, Péter Sramkó, Gábor Appl Plant Sci Primer Notes PREMISE: Ferula sadleriana (Apiaceae) is a polycarpic, perennial herb with a very limited range and small populations. It is listed as “endangered” on the IUCN Red List of Threatened Species. Microsatellite markers can contribute to conservation efforts by allowing the study of the genetic structure of its shrinking populations. METHODS AND RESULTS: We used a microsatellite‐enriched library combined with an Illumina sequencing approach to develop simple sequence repeat markers in our target species. Out of 44 tested primer pairs, 22 provided specific products, and 13 showed heterologous amplification in the target species. Cross‐species amplification was achieved at 20 and 19 loci in two congeneric species, F. soongarica and F. tatarica, respectively. CONCLUSIONS: The primers described here are the first tools that enable the population genetic characterization of F. sadleriana. Our results suggest a wider applicability in the genus Ferula. John Wiley and Sons Inc. 2020-02-11 /pmc/articles/PMC7035428/ /pubmed/32110501 http://dx.doi.org/10.1002/aps3.11321 Text en © 2020 Malkócs et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Primer Notes Malkócs, Tamás Laczkó, Levente Bereczki, Judit Meglécz, Emese Szövényi, Péter Sramkó, Gábor Development and characterization of novel SSR markers in the endangered endemic species Ferula sadleriana |
title | Development and characterization of novel SSR markers in the endangered endemic species Ferula sadleriana
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title_full | Development and characterization of novel SSR markers in the endangered endemic species Ferula sadleriana
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title_fullStr | Development and characterization of novel SSR markers in the endangered endemic species Ferula sadleriana
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title_full_unstemmed | Development and characterization of novel SSR markers in the endangered endemic species Ferula sadleriana
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title_short | Development and characterization of novel SSR markers in the endangered endemic species Ferula sadleriana
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title_sort | development and characterization of novel ssr markers in the endangered endemic species ferula sadleriana |
topic | Primer Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7035428/ https://www.ncbi.nlm.nih.gov/pubmed/32110501 http://dx.doi.org/10.1002/aps3.11321 |
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