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Packing structure of semiflexible rings

Unraveling the packing structure of dense assemblies of semiflexible rings is not only fundamental for the dynamical description of polymer rings, but also key to understand biopackaging, such as observed in circular DNA of viruses or genome folding. Here we use X-ray tomography to study the geometr...

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Autores principales: Gómez, Leopoldo R., García, Nicolás A., Pöschel, Thorsten
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7035624/
https://www.ncbi.nlm.nih.gov/pubmed/32024763
http://dx.doi.org/10.1073/pnas.1914268117
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author Gómez, Leopoldo R.
García, Nicolás A.
Pöschel, Thorsten
author_facet Gómez, Leopoldo R.
García, Nicolás A.
Pöschel, Thorsten
author_sort Gómez, Leopoldo R.
collection PubMed
description Unraveling the packing structure of dense assemblies of semiflexible rings is not only fundamental for the dynamical description of polymer rings, but also key to understand biopackaging, such as observed in circular DNA of viruses or genome folding. Here we use X-ray tomography to study the geometrical and topological features of disordered packings of rubber bands in a cylindrical container. Assemblies of short bands assume a liquid-like disordered structure, with short-range orientational order, and reveal only minor influence of the container. In the case of longer bands, the confinement causes folded configurations and the bands interpenetrate and entangle. Most of the systems are found to display a threading network which percolates the system. Surprisingly, for long bands whose diameter is more than twice the diameter of the container, we found that all bands interpenetrate each other, in a complex fully entangled structure.
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spelling pubmed-70356242020-02-28 Packing structure of semiflexible rings Gómez, Leopoldo R. García, Nicolás A. Pöschel, Thorsten Proc Natl Acad Sci U S A Physical Sciences Unraveling the packing structure of dense assemblies of semiflexible rings is not only fundamental for the dynamical description of polymer rings, but also key to understand biopackaging, such as observed in circular DNA of viruses or genome folding. Here we use X-ray tomography to study the geometrical and topological features of disordered packings of rubber bands in a cylindrical container. Assemblies of short bands assume a liquid-like disordered structure, with short-range orientational order, and reveal only minor influence of the container. In the case of longer bands, the confinement causes folded configurations and the bands interpenetrate and entangle. Most of the systems are found to display a threading network which percolates the system. Surprisingly, for long bands whose diameter is more than twice the diameter of the container, we found that all bands interpenetrate each other, in a complex fully entangled structure. National Academy of Sciences 2020-02-18 2020-02-05 /pmc/articles/PMC7035624/ /pubmed/32024763 http://dx.doi.org/10.1073/pnas.1914268117 Text en Copyright © 2020 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/ https://creativecommons.org/licenses/by-nc-nd/4.0/This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Physical Sciences
Gómez, Leopoldo R.
García, Nicolás A.
Pöschel, Thorsten
Packing structure of semiflexible rings
title Packing structure of semiflexible rings
title_full Packing structure of semiflexible rings
title_fullStr Packing structure of semiflexible rings
title_full_unstemmed Packing structure of semiflexible rings
title_short Packing structure of semiflexible rings
title_sort packing structure of semiflexible rings
topic Physical Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7035624/
https://www.ncbi.nlm.nih.gov/pubmed/32024763
http://dx.doi.org/10.1073/pnas.1914268117
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