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The E2F family as potential biomarkers and therapeutic targets in colon cancer

BACKGROUND: The E2F family is a group of genes encoding a series of transcription factors in higher eukaryotes and participating in the regulation of cell cycle and DNA synthesis in mammals. This study was designed to investigate the role of E2F family in colon cancer. METHODS: In this study, the tr...

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Autores principales: Yao, Haibo, Lu, Fang, Shao, Yanfei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7035869/
https://www.ncbi.nlm.nih.gov/pubmed/32117628
http://dx.doi.org/10.7717/peerj.8562
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author Yao, Haibo
Lu, Fang
Shao, Yanfei
author_facet Yao, Haibo
Lu, Fang
Shao, Yanfei
author_sort Yao, Haibo
collection PubMed
description BACKGROUND: The E2F family is a group of genes encoding a series of transcription factors in higher eukaryotes and participating in the regulation of cell cycle and DNA synthesis in mammals. This study was designed to investigate the role of E2F family in colon cancer. METHODS: In this study, the transcriptional levels of E2F1-8 in patients with colon cancer from GEPIA was examined. Meanwhile, the immunohistochemical data of the eight genes were also obtained in the The Human Protein Atlas website. Additionally, we re-identified the mRNA expression levels of these genes via real time PCR. Furthermore, the association between the levels of E2F family and stage plot as wells overall survival of patients with colon cancer were analyzed. RESULTS: We found that the mRNA and protein levels of E2F1, E2F2, E3F3, E2F5, E2F7 and E2F8 were significantly higher in colon cancer tissues than in normal colon tissues while the expression levels of E2F4 and E2F6 displayed no significant difference between colon cancer tissues and normal tissues. Additionally, E2F3, E2F4, E2F7 and E2F8 were significantly associated with the stages of colon cancer. The Kaplan-Meier Plotter showed that the high levels of E2F3 conferred a worse overall survival and disease free survival of patients with colon cancer. Also, high levels of E2F4 resulted in a worse overall survival. CONCLUSION: Our study implied that E2F3, E2F4, E2F7 and E2F8 are potential targets of precision therapy for patients with colon cancer while E2F1, E2F2, E3F3, E2F5, E2F7 and E2F8 are potential biomarkers for the diagnosis of colon cancer.
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spelling pubmed-70358692020-02-28 The E2F family as potential biomarkers and therapeutic targets in colon cancer Yao, Haibo Lu, Fang Shao, Yanfei PeerJ Bioinformatics BACKGROUND: The E2F family is a group of genes encoding a series of transcription factors in higher eukaryotes and participating in the regulation of cell cycle and DNA synthesis in mammals. This study was designed to investigate the role of E2F family in colon cancer. METHODS: In this study, the transcriptional levels of E2F1-8 in patients with colon cancer from GEPIA was examined. Meanwhile, the immunohistochemical data of the eight genes were also obtained in the The Human Protein Atlas website. Additionally, we re-identified the mRNA expression levels of these genes via real time PCR. Furthermore, the association between the levels of E2F family and stage plot as wells overall survival of patients with colon cancer were analyzed. RESULTS: We found that the mRNA and protein levels of E2F1, E2F2, E3F3, E2F5, E2F7 and E2F8 were significantly higher in colon cancer tissues than in normal colon tissues while the expression levels of E2F4 and E2F6 displayed no significant difference between colon cancer tissues and normal tissues. Additionally, E2F3, E2F4, E2F7 and E2F8 were significantly associated with the stages of colon cancer. The Kaplan-Meier Plotter showed that the high levels of E2F3 conferred a worse overall survival and disease free survival of patients with colon cancer. Also, high levels of E2F4 resulted in a worse overall survival. CONCLUSION: Our study implied that E2F3, E2F4, E2F7 and E2F8 are potential targets of precision therapy for patients with colon cancer while E2F1, E2F2, E3F3, E2F5, E2F7 and E2F8 are potential biomarkers for the diagnosis of colon cancer. PeerJ Inc. 2020-02-19 /pmc/articles/PMC7035869/ /pubmed/32117628 http://dx.doi.org/10.7717/peerj.8562 Text en ©2020 Yao et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Yao, Haibo
Lu, Fang
Shao, Yanfei
The E2F family as potential biomarkers and therapeutic targets in colon cancer
title The E2F family as potential biomarkers and therapeutic targets in colon cancer
title_full The E2F family as potential biomarkers and therapeutic targets in colon cancer
title_fullStr The E2F family as potential biomarkers and therapeutic targets in colon cancer
title_full_unstemmed The E2F family as potential biomarkers and therapeutic targets in colon cancer
title_short The E2F family as potential biomarkers and therapeutic targets in colon cancer
title_sort e2f family as potential biomarkers and therapeutic targets in colon cancer
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7035869/
https://www.ncbi.nlm.nih.gov/pubmed/32117628
http://dx.doi.org/10.7717/peerj.8562
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