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Video Image Enhancement and Machine Learning Pipeline for Underwater Animal Detection and Classification at Cabled Observatories

An understanding of marine ecosystems and their biodiversity is relevant to sustainable use of the goods and services they offer. Since marine areas host complex ecosystems, it is important to develop spatially widespread monitoring networks capable of providing large amounts of multiparametric info...

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Detalles Bibliográficos
Autores principales: Lopez-Vazquez, Vanesa, Lopez-Guede, Jose Manuel, Marini, Simone, Fanelli, Emanuela, Johnsen, Espen, Aguzzi, Jacopo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7038495/
https://www.ncbi.nlm.nih.gov/pubmed/32012976
http://dx.doi.org/10.3390/s20030726
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author Lopez-Vazquez, Vanesa
Lopez-Guede, Jose Manuel
Marini, Simone
Fanelli, Emanuela
Johnsen, Espen
Aguzzi, Jacopo
author_facet Lopez-Vazquez, Vanesa
Lopez-Guede, Jose Manuel
Marini, Simone
Fanelli, Emanuela
Johnsen, Espen
Aguzzi, Jacopo
author_sort Lopez-Vazquez, Vanesa
collection PubMed
description An understanding of marine ecosystems and their biodiversity is relevant to sustainable use of the goods and services they offer. Since marine areas host complex ecosystems, it is important to develop spatially widespread monitoring networks capable of providing large amounts of multiparametric information, encompassing both biotic and abiotic variables, and describing the ecological dynamics of the observed species. In this context, imaging devices are valuable tools that complement other biological and oceanographic monitoring devices. Nevertheless, large amounts of images or movies cannot all be manually processed, and autonomous routines for recognizing the relevant content, classification, and tagging are urgently needed. In this work, we propose a pipeline for the analysis of visual data that integrates video/image annotation tools for defining, training, and validation of datasets with video/image enhancement and machine and deep learning approaches. Such a pipeline is required to achieve good performance in the recognition and classification tasks of mobile and sessile megafauna, in order to obtain integrated information on spatial distribution and temporal dynamics. A prototype implementation of the analysis pipeline is provided in the context of deep-sea videos taken by one of the fixed cameras at the LoVe Ocean Observatory network of Lofoten Islands (Norway) at 260 m depth, in the Barents Sea, which has shown good classification results on an independent test dataset with an accuracy value of 76.18% and an area under the curve (AUC) value of 87.59%.
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spelling pubmed-70384952020-03-09 Video Image Enhancement and Machine Learning Pipeline for Underwater Animal Detection and Classification at Cabled Observatories Lopez-Vazquez, Vanesa Lopez-Guede, Jose Manuel Marini, Simone Fanelli, Emanuela Johnsen, Espen Aguzzi, Jacopo Sensors (Basel) Article An understanding of marine ecosystems and their biodiversity is relevant to sustainable use of the goods and services they offer. Since marine areas host complex ecosystems, it is important to develop spatially widespread monitoring networks capable of providing large amounts of multiparametric information, encompassing both biotic and abiotic variables, and describing the ecological dynamics of the observed species. In this context, imaging devices are valuable tools that complement other biological and oceanographic monitoring devices. Nevertheless, large amounts of images or movies cannot all be manually processed, and autonomous routines for recognizing the relevant content, classification, and tagging are urgently needed. In this work, we propose a pipeline for the analysis of visual data that integrates video/image annotation tools for defining, training, and validation of datasets with video/image enhancement and machine and deep learning approaches. Such a pipeline is required to achieve good performance in the recognition and classification tasks of mobile and sessile megafauna, in order to obtain integrated information on spatial distribution and temporal dynamics. A prototype implementation of the analysis pipeline is provided in the context of deep-sea videos taken by one of the fixed cameras at the LoVe Ocean Observatory network of Lofoten Islands (Norway) at 260 m depth, in the Barents Sea, which has shown good classification results on an independent test dataset with an accuracy value of 76.18% and an area under the curve (AUC) value of 87.59%. MDPI 2020-01-28 /pmc/articles/PMC7038495/ /pubmed/32012976 http://dx.doi.org/10.3390/s20030726 Text en © 2020 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ).
spellingShingle Article
Lopez-Vazquez, Vanesa
Lopez-Guede, Jose Manuel
Marini, Simone
Fanelli, Emanuela
Johnsen, Espen
Aguzzi, Jacopo
Video Image Enhancement and Machine Learning Pipeline for Underwater Animal Detection and Classification at Cabled Observatories
title Video Image Enhancement and Machine Learning Pipeline for Underwater Animal Detection and Classification at Cabled Observatories
title_full Video Image Enhancement and Machine Learning Pipeline for Underwater Animal Detection and Classification at Cabled Observatories
title_fullStr Video Image Enhancement and Machine Learning Pipeline for Underwater Animal Detection and Classification at Cabled Observatories
title_full_unstemmed Video Image Enhancement and Machine Learning Pipeline for Underwater Animal Detection and Classification at Cabled Observatories
title_short Video Image Enhancement and Machine Learning Pipeline for Underwater Animal Detection and Classification at Cabled Observatories
title_sort video image enhancement and machine learning pipeline for underwater animal detection and classification at cabled observatories
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7038495/
https://www.ncbi.nlm.nih.gov/pubmed/32012976
http://dx.doi.org/10.3390/s20030726
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