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Imaging Wheat Canopy Through Stereo Vision: Overcoming the Challenges of the Laboratory to Field Transition for Morphological Features Extraction

Stereo vision is a 3D imaging method that allows quick measurement of plant architecture. Historically, the method has mainly been developed in controlled conditions. This study identified several challenges to adapt the method to natural field conditions and propose solutions. The plant traits stud...

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Autores principales: Dandrifosse, Sébastien, Bouvry, Arnaud, Leemans, Vincent, Dumont, Benjamin, Mercatoris, Benoît
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7040167/
https://www.ncbi.nlm.nih.gov/pubmed/32133023
http://dx.doi.org/10.3389/fpls.2020.00096
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author Dandrifosse, Sébastien
Bouvry, Arnaud
Leemans, Vincent
Dumont, Benjamin
Mercatoris, Benoît
author_facet Dandrifosse, Sébastien
Bouvry, Arnaud
Leemans, Vincent
Dumont, Benjamin
Mercatoris, Benoît
author_sort Dandrifosse, Sébastien
collection PubMed
description Stereo vision is a 3D imaging method that allows quick measurement of plant architecture. Historically, the method has mainly been developed in controlled conditions. This study identified several challenges to adapt the method to natural field conditions and propose solutions. The plant traits studied were leaf area, mean leaf angle, leaf angle distribution, and canopy height. The experiment took place in a winter wheat, Triticum aestivum L., field dedicated to fertilization trials at Gembloux (Belgium). Images were acquired thanks to two nadir cameras. A machine learning algorithm using RGB and HSV color spaces is proposed to perform soil-plant segmentation robust to light conditions. The matching between images of the two cameras and the leaf area computation was improved if the number of pixels in the image of a scene was binned from 2560 × 2048 to 1280 × 1024 pixels, for a distance of 1 m between the cameras and the canopy. Height descriptors such as median or 95th percentile of plant heights were useful to precisely compare the development of different canopies. Mean spike top height was measured with an accuracy of 97.1 %. The measurement of leaf area was affected by overlaps between leaves so that a calibration curve was necessary. The leaf area estimation presented a root mean square error (RMSE) of 0.37. The impact of wind on the variability of leaf area measurement was inferior to 3% except at the stem elongation stage. Mean leaf angles ranging from 53° to 62° were computed for the whole growing season. For each acquisition date during the vegetative stages, the variability of mean angle measurement was inferior to 1.5% which underpins that the method is precise.
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spelling pubmed-70401672020-03-04 Imaging Wheat Canopy Through Stereo Vision: Overcoming the Challenges of the Laboratory to Field Transition for Morphological Features Extraction Dandrifosse, Sébastien Bouvry, Arnaud Leemans, Vincent Dumont, Benjamin Mercatoris, Benoît Front Plant Sci Plant Science Stereo vision is a 3D imaging method that allows quick measurement of plant architecture. Historically, the method has mainly been developed in controlled conditions. This study identified several challenges to adapt the method to natural field conditions and propose solutions. The plant traits studied were leaf area, mean leaf angle, leaf angle distribution, and canopy height. The experiment took place in a winter wheat, Triticum aestivum L., field dedicated to fertilization trials at Gembloux (Belgium). Images were acquired thanks to two nadir cameras. A machine learning algorithm using RGB and HSV color spaces is proposed to perform soil-plant segmentation robust to light conditions. The matching between images of the two cameras and the leaf area computation was improved if the number of pixels in the image of a scene was binned from 2560 × 2048 to 1280 × 1024 pixels, for a distance of 1 m between the cameras and the canopy. Height descriptors such as median or 95th percentile of plant heights were useful to precisely compare the development of different canopies. Mean spike top height was measured with an accuracy of 97.1 %. The measurement of leaf area was affected by overlaps between leaves so that a calibration curve was necessary. The leaf area estimation presented a root mean square error (RMSE) of 0.37. The impact of wind on the variability of leaf area measurement was inferior to 3% except at the stem elongation stage. Mean leaf angles ranging from 53° to 62° were computed for the whole growing season. For each acquisition date during the vegetative stages, the variability of mean angle measurement was inferior to 1.5% which underpins that the method is precise. Frontiers Media S.A. 2020-02-18 /pmc/articles/PMC7040167/ /pubmed/32133023 http://dx.doi.org/10.3389/fpls.2020.00096 Text en Copyright © 2020 Dandrifosse, Bouvry, Leemans, Dumont and Mercatoris http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Dandrifosse, Sébastien
Bouvry, Arnaud
Leemans, Vincent
Dumont, Benjamin
Mercatoris, Benoît
Imaging Wheat Canopy Through Stereo Vision: Overcoming the Challenges of the Laboratory to Field Transition for Morphological Features Extraction
title Imaging Wheat Canopy Through Stereo Vision: Overcoming the Challenges of the Laboratory to Field Transition for Morphological Features Extraction
title_full Imaging Wheat Canopy Through Stereo Vision: Overcoming the Challenges of the Laboratory to Field Transition for Morphological Features Extraction
title_fullStr Imaging Wheat Canopy Through Stereo Vision: Overcoming the Challenges of the Laboratory to Field Transition for Morphological Features Extraction
title_full_unstemmed Imaging Wheat Canopy Through Stereo Vision: Overcoming the Challenges of the Laboratory to Field Transition for Morphological Features Extraction
title_short Imaging Wheat Canopy Through Stereo Vision: Overcoming the Challenges of the Laboratory to Field Transition for Morphological Features Extraction
title_sort imaging wheat canopy through stereo vision: overcoming the challenges of the laboratory to field transition for morphological features extraction
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7040167/
https://www.ncbi.nlm.nih.gov/pubmed/32133023
http://dx.doi.org/10.3389/fpls.2020.00096
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