Cargando…

Multistability in the epithelial-mesenchymal transition network

BACKGROUND: The transitions between epithelial (E) and mesenchymal (M) cell phenotypes are essential in many biological processes like tissue development and cancer metastasis. Previous studies, both modeling and experimental, suggested that in addition to E and M states, the network responsible for...

Descripción completa

Detalles Bibliográficos
Autores principales: Xin, Ying, Cummins, Bree, Gedeon, Tomáš
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7041120/
https://www.ncbi.nlm.nih.gov/pubmed/32093616
http://dx.doi.org/10.1186/s12859-020-3413-1
_version_ 1783501109438971904
author Xin, Ying
Cummins, Bree
Gedeon, Tomáš
author_facet Xin, Ying
Cummins, Bree
Gedeon, Tomáš
author_sort Xin, Ying
collection PubMed
description BACKGROUND: The transitions between epithelial (E) and mesenchymal (M) cell phenotypes are essential in many biological processes like tissue development and cancer metastasis. Previous studies, both modeling and experimental, suggested that in addition to E and M states, the network responsible for these phenotypes exhibits intermediate phenotypes between E and M states. The number and importance of such states is subject to intense discussion in the epithelial-mesenchymal transition (EMT) community. RESULTS: Previous modeling efforts used traditional bifurcation analysis to explore the number of the steady states that correspond to E, M and intermediate states by varying one or two parameters at a time. Since the system has dozens of parameters that are largely unknown, it remains a challenging problem to fully describe the potential set of states and their relationship across all parameters. We use the computational tool DSGRN (Dynamic Signatures Generated by Regulatory Networks) to explore the intermediate states of an EMT model network by computing summaries of the dynamics across all of parameter space. We find that the only attractors in the system are equilibria, that E and M states dominate across parameter space, but that bistability and multistability are common. Even at extreme levels of some of the known inducers of the transition, there is a certain proportion of the parameter space at which an E or an M state co-exists with other stable steady states. CONCLUSIONS: Our results suggest that the multistability is broadly present in the EMT network across parameters and thus response of cells to signals may strongly depend on the particular cell line and genetic background.
format Online
Article
Text
id pubmed-7041120
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-70411202020-03-02 Multistability in the epithelial-mesenchymal transition network Xin, Ying Cummins, Bree Gedeon, Tomáš BMC Bioinformatics Research Article BACKGROUND: The transitions between epithelial (E) and mesenchymal (M) cell phenotypes are essential in many biological processes like tissue development and cancer metastasis. Previous studies, both modeling and experimental, suggested that in addition to E and M states, the network responsible for these phenotypes exhibits intermediate phenotypes between E and M states. The number and importance of such states is subject to intense discussion in the epithelial-mesenchymal transition (EMT) community. RESULTS: Previous modeling efforts used traditional bifurcation analysis to explore the number of the steady states that correspond to E, M and intermediate states by varying one or two parameters at a time. Since the system has dozens of parameters that are largely unknown, it remains a challenging problem to fully describe the potential set of states and their relationship across all parameters. We use the computational tool DSGRN (Dynamic Signatures Generated by Regulatory Networks) to explore the intermediate states of an EMT model network by computing summaries of the dynamics across all of parameter space. We find that the only attractors in the system are equilibria, that E and M states dominate across parameter space, but that bistability and multistability are common. Even at extreme levels of some of the known inducers of the transition, there is a certain proportion of the parameter space at which an E or an M state co-exists with other stable steady states. CONCLUSIONS: Our results suggest that the multistability is broadly present in the EMT network across parameters and thus response of cells to signals may strongly depend on the particular cell line and genetic background. BioMed Central 2020-02-24 /pmc/articles/PMC7041120/ /pubmed/32093616 http://dx.doi.org/10.1186/s12859-020-3413-1 Text en © The Author(s) 2020 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Xin, Ying
Cummins, Bree
Gedeon, Tomáš
Multistability in the epithelial-mesenchymal transition network
title Multistability in the epithelial-mesenchymal transition network
title_full Multistability in the epithelial-mesenchymal transition network
title_fullStr Multistability in the epithelial-mesenchymal transition network
title_full_unstemmed Multistability in the epithelial-mesenchymal transition network
title_short Multistability in the epithelial-mesenchymal transition network
title_sort multistability in the epithelial-mesenchymal transition network
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7041120/
https://www.ncbi.nlm.nih.gov/pubmed/32093616
http://dx.doi.org/10.1186/s12859-020-3413-1
work_keys_str_mv AT xinying multistabilityintheepithelialmesenchymaltransitionnetwork
AT cumminsbree multistabilityintheepithelialmesenchymaltransitionnetwork
AT gedeontomas multistabilityintheepithelialmesenchymaltransitionnetwork