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Multistability in the epithelial-mesenchymal transition network
BACKGROUND: The transitions between epithelial (E) and mesenchymal (M) cell phenotypes are essential in many biological processes like tissue development and cancer metastasis. Previous studies, both modeling and experimental, suggested that in addition to E and M states, the network responsible for...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7041120/ https://www.ncbi.nlm.nih.gov/pubmed/32093616 http://dx.doi.org/10.1186/s12859-020-3413-1 |
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author | Xin, Ying Cummins, Bree Gedeon, Tomáš |
author_facet | Xin, Ying Cummins, Bree Gedeon, Tomáš |
author_sort | Xin, Ying |
collection | PubMed |
description | BACKGROUND: The transitions between epithelial (E) and mesenchymal (M) cell phenotypes are essential in many biological processes like tissue development and cancer metastasis. Previous studies, both modeling and experimental, suggested that in addition to E and M states, the network responsible for these phenotypes exhibits intermediate phenotypes between E and M states. The number and importance of such states is subject to intense discussion in the epithelial-mesenchymal transition (EMT) community. RESULTS: Previous modeling efforts used traditional bifurcation analysis to explore the number of the steady states that correspond to E, M and intermediate states by varying one or two parameters at a time. Since the system has dozens of parameters that are largely unknown, it remains a challenging problem to fully describe the potential set of states and their relationship across all parameters. We use the computational tool DSGRN (Dynamic Signatures Generated by Regulatory Networks) to explore the intermediate states of an EMT model network by computing summaries of the dynamics across all of parameter space. We find that the only attractors in the system are equilibria, that E and M states dominate across parameter space, but that bistability and multistability are common. Even at extreme levels of some of the known inducers of the transition, there is a certain proportion of the parameter space at which an E or an M state co-exists with other stable steady states. CONCLUSIONS: Our results suggest that the multistability is broadly present in the EMT network across parameters and thus response of cells to signals may strongly depend on the particular cell line and genetic background. |
format | Online Article Text |
id | pubmed-7041120 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-70411202020-03-02 Multistability in the epithelial-mesenchymal transition network Xin, Ying Cummins, Bree Gedeon, Tomáš BMC Bioinformatics Research Article BACKGROUND: The transitions between epithelial (E) and mesenchymal (M) cell phenotypes are essential in many biological processes like tissue development and cancer metastasis. Previous studies, both modeling and experimental, suggested that in addition to E and M states, the network responsible for these phenotypes exhibits intermediate phenotypes between E and M states. The number and importance of such states is subject to intense discussion in the epithelial-mesenchymal transition (EMT) community. RESULTS: Previous modeling efforts used traditional bifurcation analysis to explore the number of the steady states that correspond to E, M and intermediate states by varying one or two parameters at a time. Since the system has dozens of parameters that are largely unknown, it remains a challenging problem to fully describe the potential set of states and their relationship across all parameters. We use the computational tool DSGRN (Dynamic Signatures Generated by Regulatory Networks) to explore the intermediate states of an EMT model network by computing summaries of the dynamics across all of parameter space. We find that the only attractors in the system are equilibria, that E and M states dominate across parameter space, but that bistability and multistability are common. Even at extreme levels of some of the known inducers of the transition, there is a certain proportion of the parameter space at which an E or an M state co-exists with other stable steady states. CONCLUSIONS: Our results suggest that the multistability is broadly present in the EMT network across parameters and thus response of cells to signals may strongly depend on the particular cell line and genetic background. BioMed Central 2020-02-24 /pmc/articles/PMC7041120/ /pubmed/32093616 http://dx.doi.org/10.1186/s12859-020-3413-1 Text en © The Author(s) 2020 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Xin, Ying Cummins, Bree Gedeon, Tomáš Multistability in the epithelial-mesenchymal transition network |
title | Multistability in the epithelial-mesenchymal transition network |
title_full | Multistability in the epithelial-mesenchymal transition network |
title_fullStr | Multistability in the epithelial-mesenchymal transition network |
title_full_unstemmed | Multistability in the epithelial-mesenchymal transition network |
title_short | Multistability in the epithelial-mesenchymal transition network |
title_sort | multistability in the epithelial-mesenchymal transition network |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7041120/ https://www.ncbi.nlm.nih.gov/pubmed/32093616 http://dx.doi.org/10.1186/s12859-020-3413-1 |
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