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PYLFIRE: Python implementation of likelihood-free inference by ratio estimation
Likelihood-free inference for simulator-based models is an emerging methodological branch of statistics which has attracted considerable attention in applications across diverse fields such as population genetics, astronomy and economics. Recently, the power of statistical classifiers has been harne...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
F1000 Research Limited
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7041362/ https://www.ncbi.nlm.nih.gov/pubmed/32133422 http://dx.doi.org/10.12688/wellcomeopenres.15583.1 |
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author | Kokko, Jan Remes, Ulpu Thomas, Owen Pesonen, Henri Corander, Jukka |
author_facet | Kokko, Jan Remes, Ulpu Thomas, Owen Pesonen, Henri Corander, Jukka |
author_sort | Kokko, Jan |
collection | PubMed |
description | Likelihood-free inference for simulator-based models is an emerging methodological branch of statistics which has attracted considerable attention in applications across diverse fields such as population genetics, astronomy and economics. Recently, the power of statistical classifiers has been harnessed in likelihood-free inference to obtain either point estimates or even posterior distributions of model parameters. Here we introduce PYLFIRE, an open-source Python implementation of the inference method LFIRE (likelihood-free inference by ratio estimation) that uses penalised logistic regression. PYLFIRE is made available as part of the general ELFI inference software http://elfi.ai to benefit both the user and developer communities for likelihood-free inference. |
format | Online Article Text |
id | pubmed-7041362 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | F1000 Research Limited |
record_format | MEDLINE/PubMed |
spelling | pubmed-70413622020-03-03 PYLFIRE: Python implementation of likelihood-free inference by ratio estimation Kokko, Jan Remes, Ulpu Thomas, Owen Pesonen, Henri Corander, Jukka Wellcome Open Res Software Tool Article Likelihood-free inference for simulator-based models is an emerging methodological branch of statistics which has attracted considerable attention in applications across diverse fields such as population genetics, astronomy and economics. Recently, the power of statistical classifiers has been harnessed in likelihood-free inference to obtain either point estimates or even posterior distributions of model parameters. Here we introduce PYLFIRE, an open-source Python implementation of the inference method LFIRE (likelihood-free inference by ratio estimation) that uses penalised logistic regression. PYLFIRE is made available as part of the general ELFI inference software http://elfi.ai to benefit both the user and developer communities for likelihood-free inference. F1000 Research Limited 2019-12-10 /pmc/articles/PMC7041362/ /pubmed/32133422 http://dx.doi.org/10.12688/wellcomeopenres.15583.1 Text en Copyright: © 2019 Kokko J et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Software Tool Article Kokko, Jan Remes, Ulpu Thomas, Owen Pesonen, Henri Corander, Jukka PYLFIRE: Python implementation of likelihood-free inference by ratio estimation |
title | PYLFIRE: Python implementation of likelihood-free inference by ratio estimation |
title_full | PYLFIRE: Python implementation of likelihood-free inference by ratio estimation |
title_fullStr | PYLFIRE: Python implementation of likelihood-free inference by ratio estimation |
title_full_unstemmed | PYLFIRE: Python implementation of likelihood-free inference by ratio estimation |
title_short | PYLFIRE: Python implementation of likelihood-free inference by ratio estimation |
title_sort | pylfire: python implementation of likelihood-free inference by ratio estimation |
topic | Software Tool Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7041362/ https://www.ncbi.nlm.nih.gov/pubmed/32133422 http://dx.doi.org/10.12688/wellcomeopenres.15583.1 |
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