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PYLFIRE: Python implementation of likelihood-free inference by ratio estimation

Likelihood-free inference for simulator-based models is an emerging methodological branch of statistics which has attracted considerable attention in applications across diverse fields such as population genetics, astronomy and economics. Recently, the power of statistical classifiers has been harne...

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Detalles Bibliográficos
Autores principales: Kokko, Jan, Remes, Ulpu, Thomas, Owen, Pesonen, Henri, Corander, Jukka
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000 Research Limited 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7041362/
https://www.ncbi.nlm.nih.gov/pubmed/32133422
http://dx.doi.org/10.12688/wellcomeopenres.15583.1
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author Kokko, Jan
Remes, Ulpu
Thomas, Owen
Pesonen, Henri
Corander, Jukka
author_facet Kokko, Jan
Remes, Ulpu
Thomas, Owen
Pesonen, Henri
Corander, Jukka
author_sort Kokko, Jan
collection PubMed
description Likelihood-free inference for simulator-based models is an emerging methodological branch of statistics which has attracted considerable attention in applications across diverse fields such as population genetics, astronomy and economics. Recently, the power of statistical classifiers has been harnessed in likelihood-free inference to obtain either point estimates or even posterior distributions of model parameters. Here we introduce PYLFIRE, an open-source Python implementation of the inference method LFIRE (likelihood-free inference by ratio estimation) that uses penalised logistic regression. PYLFIRE is made available as part of the general ELFI inference software http://elfi.ai to benefit both the user and developer communities for likelihood-free inference.
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spelling pubmed-70413622020-03-03 PYLFIRE: Python implementation of likelihood-free inference by ratio estimation Kokko, Jan Remes, Ulpu Thomas, Owen Pesonen, Henri Corander, Jukka Wellcome Open Res Software Tool Article Likelihood-free inference for simulator-based models is an emerging methodological branch of statistics which has attracted considerable attention in applications across diverse fields such as population genetics, astronomy and economics. Recently, the power of statistical classifiers has been harnessed in likelihood-free inference to obtain either point estimates or even posterior distributions of model parameters. Here we introduce PYLFIRE, an open-source Python implementation of the inference method LFIRE (likelihood-free inference by ratio estimation) that uses penalised logistic regression. PYLFIRE is made available as part of the general ELFI inference software http://elfi.ai to benefit both the user and developer communities for likelihood-free inference. F1000 Research Limited 2019-12-10 /pmc/articles/PMC7041362/ /pubmed/32133422 http://dx.doi.org/10.12688/wellcomeopenres.15583.1 Text en Copyright: © 2019 Kokko J et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software Tool Article
Kokko, Jan
Remes, Ulpu
Thomas, Owen
Pesonen, Henri
Corander, Jukka
PYLFIRE: Python implementation of likelihood-free inference by ratio estimation
title PYLFIRE: Python implementation of likelihood-free inference by ratio estimation
title_full PYLFIRE: Python implementation of likelihood-free inference by ratio estimation
title_fullStr PYLFIRE: Python implementation of likelihood-free inference by ratio estimation
title_full_unstemmed PYLFIRE: Python implementation of likelihood-free inference by ratio estimation
title_short PYLFIRE: Python implementation of likelihood-free inference by ratio estimation
title_sort pylfire: python implementation of likelihood-free inference by ratio estimation
topic Software Tool Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7041362/
https://www.ncbi.nlm.nih.gov/pubmed/32133422
http://dx.doi.org/10.12688/wellcomeopenres.15583.1
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