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Geographic Authentication of Eucommia ulmoides Leaves Using Multivariate Analysis and Preliminary Study on the Compositional Response to Environment
To explore the influences of different cultivated areas on the chemical profiles of Eucommia ulmoides leaves (EUL) and rapidly authenticate its geographical origins, 187 samples from 13 provinces in China were systematically investigated using three data fusion strategies (low, mid, and high level)...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7042207/ https://www.ncbi.nlm.nih.gov/pubmed/32140161 http://dx.doi.org/10.3389/fpls.2020.00079 |
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author | Wang, Chao-Yong Tang, Li Li, Li Zhou, Qiang Li, You-Ji Li, Jing Wang, Yuan-Zhong |
author_facet | Wang, Chao-Yong Tang, Li Li, Li Zhou, Qiang Li, You-Ji Li, Jing Wang, Yuan-Zhong |
author_sort | Wang, Chao-Yong |
collection | PubMed |
description | To explore the influences of different cultivated areas on the chemical profiles of Eucommia ulmoides leaves (EUL) and rapidly authenticate its geographical origins, 187 samples from 13 provinces in China were systematically investigated using three data fusion strategies (low, mid, and high level) combined with two discrimination model algorithms (partial least squares discrimination analysis; random forest, RF). RF models constructed by high-level data fusion with different modes of different spectral data (Fourier transform near-infrared spectrum and attenuated total reflection Fourier transform mid-infrared spectrum) were most suitable for identifying EULs from different geographical origins. The accuracy rates of calibration and validation set were 92.86% and 93.44%, respectively. In addition, climate parameters were systematically investigated the cluster difference in our study. Some interesting and novel information could be found from the clustering tree diagram of hierarchical cluster analysis. The Xinjiang Autonomous Region (Region 5) located in the high latitude area was the only region in the middle temperate zone of all sample collection areas in which the samples belonged to an individual class no matter their distance in the tree diagram. The samples were from a relatively high elevation in the Shennongjia Forest District in Hubei Province (>1200 m), which is the main difference from the samples from Xiangyang City (78 m). Thus, the sample clusters from region 9 are different from the sample clusters from other regions. The results would provide a reference for further research to those samples from the special cluster. |
format | Online Article Text |
id | pubmed-7042207 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-70422072020-03-05 Geographic Authentication of Eucommia ulmoides Leaves Using Multivariate Analysis and Preliminary Study on the Compositional Response to Environment Wang, Chao-Yong Tang, Li Li, Li Zhou, Qiang Li, You-Ji Li, Jing Wang, Yuan-Zhong Front Plant Sci Plant Science To explore the influences of different cultivated areas on the chemical profiles of Eucommia ulmoides leaves (EUL) and rapidly authenticate its geographical origins, 187 samples from 13 provinces in China were systematically investigated using three data fusion strategies (low, mid, and high level) combined with two discrimination model algorithms (partial least squares discrimination analysis; random forest, RF). RF models constructed by high-level data fusion with different modes of different spectral data (Fourier transform near-infrared spectrum and attenuated total reflection Fourier transform mid-infrared spectrum) were most suitable for identifying EULs from different geographical origins. The accuracy rates of calibration and validation set were 92.86% and 93.44%, respectively. In addition, climate parameters were systematically investigated the cluster difference in our study. Some interesting and novel information could be found from the clustering tree diagram of hierarchical cluster analysis. The Xinjiang Autonomous Region (Region 5) located in the high latitude area was the only region in the middle temperate zone of all sample collection areas in which the samples belonged to an individual class no matter their distance in the tree diagram. The samples were from a relatively high elevation in the Shennongjia Forest District in Hubei Province (>1200 m), which is the main difference from the samples from Xiangyang City (78 m). Thus, the sample clusters from region 9 are different from the sample clusters from other regions. The results would provide a reference for further research to those samples from the special cluster. Frontiers Media S.A. 2020-02-19 /pmc/articles/PMC7042207/ /pubmed/32140161 http://dx.doi.org/10.3389/fpls.2020.00079 Text en Copyright © 2020 Wang, Tang, Li, Zhou, Li, Li and Wang http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Wang, Chao-Yong Tang, Li Li, Li Zhou, Qiang Li, You-Ji Li, Jing Wang, Yuan-Zhong Geographic Authentication of Eucommia ulmoides Leaves Using Multivariate Analysis and Preliminary Study on the Compositional Response to Environment |
title | Geographic Authentication of Eucommia ulmoides Leaves Using Multivariate Analysis and Preliminary Study on the Compositional Response to Environment |
title_full | Geographic Authentication of Eucommia ulmoides Leaves Using Multivariate Analysis and Preliminary Study on the Compositional Response to Environment |
title_fullStr | Geographic Authentication of Eucommia ulmoides Leaves Using Multivariate Analysis and Preliminary Study on the Compositional Response to Environment |
title_full_unstemmed | Geographic Authentication of Eucommia ulmoides Leaves Using Multivariate Analysis and Preliminary Study on the Compositional Response to Environment |
title_short | Geographic Authentication of Eucommia ulmoides Leaves Using Multivariate Analysis and Preliminary Study on the Compositional Response to Environment |
title_sort | geographic authentication of eucommia ulmoides leaves using multivariate analysis and preliminary study on the compositional response to environment |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7042207/ https://www.ncbi.nlm.nih.gov/pubmed/32140161 http://dx.doi.org/10.3389/fpls.2020.00079 |
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