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Engineering Meteorological Features to Select Stress Tolerant Hybrids in Maize
In this study we used meteorological parameters and predictive modelling interpreted by model explanation to develop stress metrics that indicate the presence of drought and heat stress at the specific environment. We started from the extreme temperature and precipitation indices, modified some of t...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7042286/ https://www.ncbi.nlm.nih.gov/pubmed/32099053 http://dx.doi.org/10.1038/s41598-020-60366-y |
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author | Mimić, Gordan Brdar, Sanja Brkić, Milica Panić, Marko Marko, Oskar Crnojević, Vladimir |
author_facet | Mimić, Gordan Brdar, Sanja Brkić, Milica Panić, Marko Marko, Oskar Crnojević, Vladimir |
author_sort | Mimić, Gordan |
collection | PubMed |
description | In this study we used meteorological parameters and predictive modelling interpreted by model explanation to develop stress metrics that indicate the presence of drought and heat stress at the specific environment. We started from the extreme temperature and precipitation indices, modified some of them and introduced additional drought indices relevant to the analysis. Based on maize’s sensitivity to stress, the growing season was divided into four stages. The features were calculated throughout the growing season and split in two groups, one for the drought and the other for heat stress. Generated meteorological features were combined with soil features and fed to random forest regression model for the yield prediction. Model explanation gave us the contribution of features to yield decrease, from which we estimated total amount of stress at the environments, which represents new environmental index. Using this index we ranked the environments according to the level of stress. More than 2400 hybrids were tested across the environments where they were grown and based on the yield stability they were marked as either tolerant or susceptible to heat, drought or combined heat and drought stress. Presented methodology and results were produced within the Syngenta Crop Challenge 2019. |
format | Online Article Text |
id | pubmed-7042286 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-70422862020-03-03 Engineering Meteorological Features to Select Stress Tolerant Hybrids in Maize Mimić, Gordan Brdar, Sanja Brkić, Milica Panić, Marko Marko, Oskar Crnojević, Vladimir Sci Rep Article In this study we used meteorological parameters and predictive modelling interpreted by model explanation to develop stress metrics that indicate the presence of drought and heat stress at the specific environment. We started from the extreme temperature and precipitation indices, modified some of them and introduced additional drought indices relevant to the analysis. Based on maize’s sensitivity to stress, the growing season was divided into four stages. The features were calculated throughout the growing season and split in two groups, one for the drought and the other for heat stress. Generated meteorological features were combined with soil features and fed to random forest regression model for the yield prediction. Model explanation gave us the contribution of features to yield decrease, from which we estimated total amount of stress at the environments, which represents new environmental index. Using this index we ranked the environments according to the level of stress. More than 2400 hybrids were tested across the environments where they were grown and based on the yield stability they were marked as either tolerant or susceptible to heat, drought or combined heat and drought stress. Presented methodology and results were produced within the Syngenta Crop Challenge 2019. Nature Publishing Group UK 2020-02-25 /pmc/articles/PMC7042286/ /pubmed/32099053 http://dx.doi.org/10.1038/s41598-020-60366-y Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Mimić, Gordan Brdar, Sanja Brkić, Milica Panić, Marko Marko, Oskar Crnojević, Vladimir Engineering Meteorological Features to Select Stress Tolerant Hybrids in Maize |
title | Engineering Meteorological Features to Select Stress Tolerant Hybrids in Maize |
title_full | Engineering Meteorological Features to Select Stress Tolerant Hybrids in Maize |
title_fullStr | Engineering Meteorological Features to Select Stress Tolerant Hybrids in Maize |
title_full_unstemmed | Engineering Meteorological Features to Select Stress Tolerant Hybrids in Maize |
title_short | Engineering Meteorological Features to Select Stress Tolerant Hybrids in Maize |
title_sort | engineering meteorological features to select stress tolerant hybrids in maize |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7042286/ https://www.ncbi.nlm.nih.gov/pubmed/32099053 http://dx.doi.org/10.1038/s41598-020-60366-y |
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