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New perspectives on analysing data from biological collections based on social network analytics
Biological collections have been historically regarded as fundamental sources of scientific information on biodiversity. They are commonly associated with a variety of biases, which must be characterized and mitigated before data can be consumed. In this work, we are motivated by taxonomic and colle...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7042289/ https://www.ncbi.nlm.nih.gov/pubmed/32098973 http://dx.doi.org/10.1038/s41598-020-60134-y |
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author | de Siracusa, Pedro C. Gadelha, Luiz M. R. Ziviani, Artur |
author_facet | de Siracusa, Pedro C. Gadelha, Luiz M. R. Ziviani, Artur |
author_sort | de Siracusa, Pedro C. |
collection | PubMed |
description | Biological collections have been historically regarded as fundamental sources of scientific information on biodiversity. They are commonly associated with a variety of biases, which must be characterized and mitigated before data can be consumed. In this work, we are motivated by taxonomic and collector biases, which can be understood as the effect of particular recording preferences of key collectors on shaping the overall taxonomic composition of biological collections they contribute to. In this context, we propose two network models as the first steps towards a network-based conceptual framework for understanding the formation of biological collections as a result of the composition of collectors’ interests and activities. Building upon the defined network models, we present a case study in which we use our models to explore the community of collectors and the taxonomic composition of the University of Brasília herbarium. We describe topological features of the networks and point out some of the most relevant collectors in the biological collection as well as their taxonomic groups of interest. We also investigate their collaborative behaviour while recording specimens. Finally, we discuss future perspectives for incorporating temporal and geographical dimensions to the models. Moreover, we indicate some possible investigation directions that could benefit from our approach based on social network analytics to model and analyse biological collections. |
format | Online Article Text |
id | pubmed-7042289 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-70422892020-03-03 New perspectives on analysing data from biological collections based on social network analytics de Siracusa, Pedro C. Gadelha, Luiz M. R. Ziviani, Artur Sci Rep Article Biological collections have been historically regarded as fundamental sources of scientific information on biodiversity. They are commonly associated with a variety of biases, which must be characterized and mitigated before data can be consumed. In this work, we are motivated by taxonomic and collector biases, which can be understood as the effect of particular recording preferences of key collectors on shaping the overall taxonomic composition of biological collections they contribute to. In this context, we propose two network models as the first steps towards a network-based conceptual framework for understanding the formation of biological collections as a result of the composition of collectors’ interests and activities. Building upon the defined network models, we present a case study in which we use our models to explore the community of collectors and the taxonomic composition of the University of Brasília herbarium. We describe topological features of the networks and point out some of the most relevant collectors in the biological collection as well as their taxonomic groups of interest. We also investigate their collaborative behaviour while recording specimens. Finally, we discuss future perspectives for incorporating temporal and geographical dimensions to the models. Moreover, we indicate some possible investigation directions that could benefit from our approach based on social network analytics to model and analyse biological collections. Nature Publishing Group UK 2020-02-25 /pmc/articles/PMC7042289/ /pubmed/32098973 http://dx.doi.org/10.1038/s41598-020-60134-y Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article de Siracusa, Pedro C. Gadelha, Luiz M. R. Ziviani, Artur New perspectives on analysing data from biological collections based on social network analytics |
title | New perspectives on analysing data from biological collections based on social network analytics |
title_full | New perspectives on analysing data from biological collections based on social network analytics |
title_fullStr | New perspectives on analysing data from biological collections based on social network analytics |
title_full_unstemmed | New perspectives on analysing data from biological collections based on social network analytics |
title_short | New perspectives on analysing data from biological collections based on social network analytics |
title_sort | new perspectives on analysing data from biological collections based on social network analytics |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7042289/ https://www.ncbi.nlm.nih.gov/pubmed/32098973 http://dx.doi.org/10.1038/s41598-020-60134-y |
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