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JUNGFRAU detector for brighter x-ray sources: Solutions for IT and data science challenges in macromolecular crystallography

In this paper, we present a data workflow developed to operate the adJUstiNg Gain detector FoR the Aramis User station (JUNGFRAU) adaptive gain charge integrating pixel-array detectors at macromolecular crystallography beamlines. We summarize current achievements for operating at 9 GB/s data-rate a...

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Autores principales: Leonarski, Filip, Mozzanica, Aldo, Brückner, Martin, Lopez-Cuenca, Carlos, Redford, Sophie, Sala, Leonardo, Babic, Andrej, Billich, Heinrich, Bunk, Oliver, Schmitt, Bernd, Wang, Meitian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Crystallographic Association 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7044001/
https://www.ncbi.nlm.nih.gov/pubmed/32128347
http://dx.doi.org/10.1063/1.5143480
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author Leonarski, Filip
Mozzanica, Aldo
Brückner, Martin
Lopez-Cuenca, Carlos
Redford, Sophie
Sala, Leonardo
Babic, Andrej
Billich, Heinrich
Bunk, Oliver
Schmitt, Bernd
Wang, Meitian
author_facet Leonarski, Filip
Mozzanica, Aldo
Brückner, Martin
Lopez-Cuenca, Carlos
Redford, Sophie
Sala, Leonardo
Babic, Andrej
Billich, Heinrich
Bunk, Oliver
Schmitt, Bernd
Wang, Meitian
author_sort Leonarski, Filip
collection PubMed
description In this paper, we present a data workflow developed to operate the adJUstiNg Gain detector FoR the Aramis User station (JUNGFRAU) adaptive gain charge integrating pixel-array detectors at macromolecular crystallography beamlines. We summarize current achievements for operating at 9 GB/s data-rate a JUNGFRAU with 4 Mpixel at 1.1 kHz frame-rate and preparations to operate at 46 GB/s data-rate a JUNGFRAU with 10 Mpixel at 2.2 kHz in the future. In this context, we highlight the challenges for computer architecture and how these challenges can be addressed with innovative hardware including IBM POWER9 servers and field-programmable gate arrays. We discuss also data science challenges, showing the effect of rounding and lossy compression schemes on the MX JUNGFRAU detector images.
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spelling pubmed-70440012020-03-03 JUNGFRAU detector for brighter x-ray sources: Solutions for IT and data science challenges in macromolecular crystallography Leonarski, Filip Mozzanica, Aldo Brückner, Martin Lopez-Cuenca, Carlos Redford, Sophie Sala, Leonardo Babic, Andrej Billich, Heinrich Bunk, Oliver Schmitt, Bernd Wang, Meitian Struct Dyn ARTICLES In this paper, we present a data workflow developed to operate the adJUstiNg Gain detector FoR the Aramis User station (JUNGFRAU) adaptive gain charge integrating pixel-array detectors at macromolecular crystallography beamlines. We summarize current achievements for operating at 9 GB/s data-rate a JUNGFRAU with 4 Mpixel at 1.1 kHz frame-rate and preparations to operate at 46 GB/s data-rate a JUNGFRAU with 10 Mpixel at 2.2 kHz in the future. In this context, we highlight the challenges for computer architecture and how these challenges can be addressed with innovative hardware including IBM POWER9 servers and field-programmable gate arrays. We discuss also data science challenges, showing the effect of rounding and lossy compression schemes on the MX JUNGFRAU detector images. American Crystallographic Association 2020-02-26 /pmc/articles/PMC7044001/ /pubmed/32128347 http://dx.doi.org/10.1063/1.5143480 Text en © 2020 Author(s). 2329-7778/2020/7(1)/014305/13 All article content, except where otherwise noted, is licensed under a Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle ARTICLES
Leonarski, Filip
Mozzanica, Aldo
Brückner, Martin
Lopez-Cuenca, Carlos
Redford, Sophie
Sala, Leonardo
Babic, Andrej
Billich, Heinrich
Bunk, Oliver
Schmitt, Bernd
Wang, Meitian
JUNGFRAU detector for brighter x-ray sources: Solutions for IT and data science challenges in macromolecular crystallography
title JUNGFRAU detector for brighter x-ray sources: Solutions for IT and data science challenges in macromolecular crystallography
title_full JUNGFRAU detector for brighter x-ray sources: Solutions for IT and data science challenges in macromolecular crystallography
title_fullStr JUNGFRAU detector for brighter x-ray sources: Solutions for IT and data science challenges in macromolecular crystallography
title_full_unstemmed JUNGFRAU detector for brighter x-ray sources: Solutions for IT and data science challenges in macromolecular crystallography
title_short JUNGFRAU detector for brighter x-ray sources: Solutions for IT and data science challenges in macromolecular crystallography
title_sort jungfrau detector for brighter x-ray sources: solutions for it and data science challenges in macromolecular crystallography
topic ARTICLES
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7044001/
https://www.ncbi.nlm.nih.gov/pubmed/32128347
http://dx.doi.org/10.1063/1.5143480
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