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JUNGFRAU detector for brighter x-ray sources: Solutions for IT and data science challenges in macromolecular crystallography
In this paper, we present a data workflow developed to operate the adJUstiNg Gain detector FoR the Aramis User station (JUNGFRAU) adaptive gain charge integrating pixel-array detectors at macromolecular crystallography beamlines. We summarize current achievements for operating at 9 GB/s data-rate a...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Crystallographic Association
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7044001/ https://www.ncbi.nlm.nih.gov/pubmed/32128347 http://dx.doi.org/10.1063/1.5143480 |
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author | Leonarski, Filip Mozzanica, Aldo Brückner, Martin Lopez-Cuenca, Carlos Redford, Sophie Sala, Leonardo Babic, Andrej Billich, Heinrich Bunk, Oliver Schmitt, Bernd Wang, Meitian |
author_facet | Leonarski, Filip Mozzanica, Aldo Brückner, Martin Lopez-Cuenca, Carlos Redford, Sophie Sala, Leonardo Babic, Andrej Billich, Heinrich Bunk, Oliver Schmitt, Bernd Wang, Meitian |
author_sort | Leonarski, Filip |
collection | PubMed |
description | In this paper, we present a data workflow developed to operate the adJUstiNg Gain detector FoR the Aramis User station (JUNGFRAU) adaptive gain charge integrating pixel-array detectors at macromolecular crystallography beamlines. We summarize current achievements for operating at 9 GB/s data-rate a JUNGFRAU with 4 Mpixel at 1.1 kHz frame-rate and preparations to operate at 46 GB/s data-rate a JUNGFRAU with 10 Mpixel at 2.2 kHz in the future. In this context, we highlight the challenges for computer architecture and how these challenges can be addressed with innovative hardware including IBM POWER9 servers and field-programmable gate arrays. We discuss also data science challenges, showing the effect of rounding and lossy compression schemes on the MX JUNGFRAU detector images. |
format | Online Article Text |
id | pubmed-7044001 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | American Crystallographic Association |
record_format | MEDLINE/PubMed |
spelling | pubmed-70440012020-03-03 JUNGFRAU detector for brighter x-ray sources: Solutions for IT and data science challenges in macromolecular crystallography Leonarski, Filip Mozzanica, Aldo Brückner, Martin Lopez-Cuenca, Carlos Redford, Sophie Sala, Leonardo Babic, Andrej Billich, Heinrich Bunk, Oliver Schmitt, Bernd Wang, Meitian Struct Dyn ARTICLES In this paper, we present a data workflow developed to operate the adJUstiNg Gain detector FoR the Aramis User station (JUNGFRAU) adaptive gain charge integrating pixel-array detectors at macromolecular crystallography beamlines. We summarize current achievements for operating at 9 GB/s data-rate a JUNGFRAU with 4 Mpixel at 1.1 kHz frame-rate and preparations to operate at 46 GB/s data-rate a JUNGFRAU with 10 Mpixel at 2.2 kHz in the future. In this context, we highlight the challenges for computer architecture and how these challenges can be addressed with innovative hardware including IBM POWER9 servers and field-programmable gate arrays. We discuss also data science challenges, showing the effect of rounding and lossy compression schemes on the MX JUNGFRAU detector images. American Crystallographic Association 2020-02-26 /pmc/articles/PMC7044001/ /pubmed/32128347 http://dx.doi.org/10.1063/1.5143480 Text en © 2020 Author(s). 2329-7778/2020/7(1)/014305/13 All article content, except where otherwise noted, is licensed under a Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | ARTICLES Leonarski, Filip Mozzanica, Aldo Brückner, Martin Lopez-Cuenca, Carlos Redford, Sophie Sala, Leonardo Babic, Andrej Billich, Heinrich Bunk, Oliver Schmitt, Bernd Wang, Meitian JUNGFRAU detector for brighter x-ray sources: Solutions for IT and data science challenges in macromolecular crystallography |
title | JUNGFRAU detector for brighter x-ray sources: Solutions for IT and data science challenges in macromolecular crystallography |
title_full | JUNGFRAU detector for brighter x-ray sources: Solutions for IT and data science challenges in macromolecular crystallography |
title_fullStr | JUNGFRAU detector for brighter x-ray sources: Solutions for IT and data science challenges in macromolecular crystallography |
title_full_unstemmed | JUNGFRAU detector for brighter x-ray sources: Solutions for IT and data science challenges in macromolecular crystallography |
title_short | JUNGFRAU detector for brighter x-ray sources: Solutions for IT and data science challenges in macromolecular crystallography |
title_sort | jungfrau detector for brighter x-ray sources: solutions for it and data science challenges in macromolecular crystallography |
topic | ARTICLES |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7044001/ https://www.ncbi.nlm.nih.gov/pubmed/32128347 http://dx.doi.org/10.1063/1.5143480 |
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