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Genetic landscape of prostate cancer conspicuity on multiparametric MRI: a protocol for a systematic review and bioinformatic analysis
INTRODUCTION: The introduction of multiparametric MRI (mpMRI) has enabled enhanced risk stratification for men at risk of prostate cancer, through accurate prebiopsy identification of clinically significant disease. However, approximately 10%–20% of significant prostate cancer may be missed on mpMRI...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BMJ Publishing Group
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7045175/ https://www.ncbi.nlm.nih.gov/pubmed/31992607 http://dx.doi.org/10.1136/bmjopen-2019-034611 |
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author | Norris, Joseph M Simpson, Benjamin S Parry, Marina A Allen, Clare Ball, Rhys Freeman, Alex Kelly, Daniel Kirkham, Alex Kasivisvanathan, Veeru Whitaker, Hayley C Emberton, Mark |
author_facet | Norris, Joseph M Simpson, Benjamin S Parry, Marina A Allen, Clare Ball, Rhys Freeman, Alex Kelly, Daniel Kirkham, Alex Kasivisvanathan, Veeru Whitaker, Hayley C Emberton, Mark |
author_sort | Norris, Joseph M |
collection | PubMed |
description | INTRODUCTION: The introduction of multiparametric MRI (mpMRI) has enabled enhanced risk stratification for men at risk of prostate cancer, through accurate prebiopsy identification of clinically significant disease. However, approximately 10%–20% of significant prostate cancer may be missed on mpMRI. It appears that the genomic basis of lesion visibility or invisibility on mpMRI may have key implications for prognosis and treatment. Here, we describe a protocol for the first systematic review and novel bioinformatic analysis of the genomic basis of prostate cancer conspicuity on mpMRI. METHODS AND ANALYSIS: A systematic search of MEDLINE, PubMed, EMBASE and Cochrane databases will be conducted. Screening, data extraction, statistical analysis and reporting will be performed in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. Included papers will be full text articles, written between January 1980 and December 2019, comparing molecular characteristics of mpMRI-visible lesions and mpMRI-invisible lesions at the DNA, DNA-methylation, RNA or protein level. Study bias and quality will be assessed using a modified Newcastle-Ottawa score. Additionally, we will conduct a novel bioinformatic analysis of supplementary material and publicly available data, to combine transcriptomic data and reveal common pathways highlighted across studies. To ensure methodological rigour, this protocol is written in accordance with the PRISMA Protocol 2015 checklist. ETHICS AND DISSEMINATION: Ethical approval will not be required, as this is an academic review of published literature. Findings will be disseminated through publications in peer-reviewed journals, and presentations at national and international conferences. PROSPERO REGISTRATION NUMBER: CRD42019147423. |
format | Online Article Text |
id | pubmed-7045175 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BMJ Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-70451752020-03-09 Genetic landscape of prostate cancer conspicuity on multiparametric MRI: a protocol for a systematic review and bioinformatic analysis Norris, Joseph M Simpson, Benjamin S Parry, Marina A Allen, Clare Ball, Rhys Freeman, Alex Kelly, Daniel Kirkham, Alex Kasivisvanathan, Veeru Whitaker, Hayley C Emberton, Mark BMJ Open Urology INTRODUCTION: The introduction of multiparametric MRI (mpMRI) has enabled enhanced risk stratification for men at risk of prostate cancer, through accurate prebiopsy identification of clinically significant disease. However, approximately 10%–20% of significant prostate cancer may be missed on mpMRI. It appears that the genomic basis of lesion visibility or invisibility on mpMRI may have key implications for prognosis and treatment. Here, we describe a protocol for the first systematic review and novel bioinformatic analysis of the genomic basis of prostate cancer conspicuity on mpMRI. METHODS AND ANALYSIS: A systematic search of MEDLINE, PubMed, EMBASE and Cochrane databases will be conducted. Screening, data extraction, statistical analysis and reporting will be performed in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. Included papers will be full text articles, written between January 1980 and December 2019, comparing molecular characteristics of mpMRI-visible lesions and mpMRI-invisible lesions at the DNA, DNA-methylation, RNA or protein level. Study bias and quality will be assessed using a modified Newcastle-Ottawa score. Additionally, we will conduct a novel bioinformatic analysis of supplementary material and publicly available data, to combine transcriptomic data and reveal common pathways highlighted across studies. To ensure methodological rigour, this protocol is written in accordance with the PRISMA Protocol 2015 checklist. ETHICS AND DISSEMINATION: Ethical approval will not be required, as this is an academic review of published literature. Findings will be disseminated through publications in peer-reviewed journals, and presentations at national and international conferences. PROSPERO REGISTRATION NUMBER: CRD42019147423. BMJ Publishing Group 2020-01-27 /pmc/articles/PMC7045175/ /pubmed/31992607 http://dx.doi.org/10.1136/bmjopen-2019-034611 Text en © Author(s) (or their employer(s)) 2020. Re-use permitted under CC BY. Published by BMJ. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed in accordance with the Creative Commons Attribution 4.0 Unported (CC BY 4.0) license, which permits others to copy, redistribute, remix, transform and build upon this work for any purpose, provided the original work is properly cited, a link to the licence is given, and indication of whether changes were made. See: https://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Urology Norris, Joseph M Simpson, Benjamin S Parry, Marina A Allen, Clare Ball, Rhys Freeman, Alex Kelly, Daniel Kirkham, Alex Kasivisvanathan, Veeru Whitaker, Hayley C Emberton, Mark Genetic landscape of prostate cancer conspicuity on multiparametric MRI: a protocol for a systematic review and bioinformatic analysis |
title | Genetic landscape of prostate cancer conspicuity on multiparametric MRI: a protocol for a systematic review and bioinformatic analysis |
title_full | Genetic landscape of prostate cancer conspicuity on multiparametric MRI: a protocol for a systematic review and bioinformatic analysis |
title_fullStr | Genetic landscape of prostate cancer conspicuity on multiparametric MRI: a protocol for a systematic review and bioinformatic analysis |
title_full_unstemmed | Genetic landscape of prostate cancer conspicuity on multiparametric MRI: a protocol for a systematic review and bioinformatic analysis |
title_short | Genetic landscape of prostate cancer conspicuity on multiparametric MRI: a protocol for a systematic review and bioinformatic analysis |
title_sort | genetic landscape of prostate cancer conspicuity on multiparametric mri: a protocol for a systematic review and bioinformatic analysis |
topic | Urology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7045175/ https://www.ncbi.nlm.nih.gov/pubmed/31992607 http://dx.doi.org/10.1136/bmjopen-2019-034611 |
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