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Amide Proton Transfer Imaging in Predicting Isocitrate Dehydrogenase 1 Mutation Status of Grade II/III Gliomas Based on Support Vector Machine
BACKGROUND: To compare the efficacies of univariate and radiomics analyses of amide proton transfer weighted (APT(W)) imaging in predicting isocitrate dehydrogenase 1 (IDH1) mutation of grade II/III gliomas. METHODS: Fifty-nine grade II/III glioma patients with known IDH1 mutation status were prospe...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7047712/ https://www.ncbi.nlm.nih.gov/pubmed/32153362 http://dx.doi.org/10.3389/fnins.2020.00144 |
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author | Han, Yu Wang, Wen Yang, Yang Sun, Ying-Zhi Xiao, Gang Tian, Qiang Zhang, Jin Cui, Guang-Bin Yan, Lin-Feng |
author_facet | Han, Yu Wang, Wen Yang, Yang Sun, Ying-Zhi Xiao, Gang Tian, Qiang Zhang, Jin Cui, Guang-Bin Yan, Lin-Feng |
author_sort | Han, Yu |
collection | PubMed |
description | BACKGROUND: To compare the efficacies of univariate and radiomics analyses of amide proton transfer weighted (APT(W)) imaging in predicting isocitrate dehydrogenase 1 (IDH1) mutation of grade II/III gliomas. METHODS: Fifty-nine grade II/III glioma patients with known IDH1 mutation status were prospectively included (IDH1 wild type, 16; IDH1 mutation, 43). A total of 1044 quantitative radiomics features were extracted from APT(W) images. The efficacies of univariate and radiomics analyses in predicting IDH1 mutation were compared. Feature values were compared between two groups with independent t-test and receiver operating characteristic (ROC) analysis was applied to evaluate the predicting efficacy of each feature. Cases were randomly assigned to either the training (n = 49) or test cohort (n = 10) for the radiomics analysis. Support vector machine with recursive feature elimination (SVM-RFE) was adopted to select the optimal feature subset. The adverse impact of the imbalance dataset in the training cohort was solved by synthetic minority oversampling technique (SMOTE). Subsequently, the performance of SVM model was assessed on both training and test cohort. RESULTS: As for univariate analysis, 18 features were significantly different between IDH1 wild-type and mutant groups (P < 0.05). Among these parameters, High Gray Level Run Emphasis All Direction offset 8 SD achieved the biggest area under the curve (AUC) (0.769) with the accuracy of 0.799. As for radiomics analysis, SVM model was established using 19 features selected with SVM-RFE. The AUC and accuracy for IDH1 mutation on training set were 0.892 and 0.952, while on the testing set were 0.7 and 0.84, respectively. CONCLUSION: Radiomics strategy based on APT image features is potentially useful for preoperative estimating IDH1 mutation status. |
format | Online Article Text |
id | pubmed-7047712 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-70477122020-03-09 Amide Proton Transfer Imaging in Predicting Isocitrate Dehydrogenase 1 Mutation Status of Grade II/III Gliomas Based on Support Vector Machine Han, Yu Wang, Wen Yang, Yang Sun, Ying-Zhi Xiao, Gang Tian, Qiang Zhang, Jin Cui, Guang-Bin Yan, Lin-Feng Front Neurosci Neuroscience BACKGROUND: To compare the efficacies of univariate and radiomics analyses of amide proton transfer weighted (APT(W)) imaging in predicting isocitrate dehydrogenase 1 (IDH1) mutation of grade II/III gliomas. METHODS: Fifty-nine grade II/III glioma patients with known IDH1 mutation status were prospectively included (IDH1 wild type, 16; IDH1 mutation, 43). A total of 1044 quantitative radiomics features were extracted from APT(W) images. The efficacies of univariate and radiomics analyses in predicting IDH1 mutation were compared. Feature values were compared between two groups with independent t-test and receiver operating characteristic (ROC) analysis was applied to evaluate the predicting efficacy of each feature. Cases were randomly assigned to either the training (n = 49) or test cohort (n = 10) for the radiomics analysis. Support vector machine with recursive feature elimination (SVM-RFE) was adopted to select the optimal feature subset. The adverse impact of the imbalance dataset in the training cohort was solved by synthetic minority oversampling technique (SMOTE). Subsequently, the performance of SVM model was assessed on both training and test cohort. RESULTS: As for univariate analysis, 18 features were significantly different between IDH1 wild-type and mutant groups (P < 0.05). Among these parameters, High Gray Level Run Emphasis All Direction offset 8 SD achieved the biggest area under the curve (AUC) (0.769) with the accuracy of 0.799. As for radiomics analysis, SVM model was established using 19 features selected with SVM-RFE. The AUC and accuracy for IDH1 mutation on training set were 0.892 and 0.952, while on the testing set were 0.7 and 0.84, respectively. CONCLUSION: Radiomics strategy based on APT image features is potentially useful for preoperative estimating IDH1 mutation status. Frontiers Media S.A. 2020-02-21 /pmc/articles/PMC7047712/ /pubmed/32153362 http://dx.doi.org/10.3389/fnins.2020.00144 Text en Copyright © 2020 Han, Wang, Yang, Sun, Xiao, Tian, Zhang, Cui and Yan. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Han, Yu Wang, Wen Yang, Yang Sun, Ying-Zhi Xiao, Gang Tian, Qiang Zhang, Jin Cui, Guang-Bin Yan, Lin-Feng Amide Proton Transfer Imaging in Predicting Isocitrate Dehydrogenase 1 Mutation Status of Grade II/III Gliomas Based on Support Vector Machine |
title | Amide Proton Transfer Imaging in Predicting Isocitrate Dehydrogenase 1 Mutation Status of Grade II/III Gliomas Based on Support Vector Machine |
title_full | Amide Proton Transfer Imaging in Predicting Isocitrate Dehydrogenase 1 Mutation Status of Grade II/III Gliomas Based on Support Vector Machine |
title_fullStr | Amide Proton Transfer Imaging in Predicting Isocitrate Dehydrogenase 1 Mutation Status of Grade II/III Gliomas Based on Support Vector Machine |
title_full_unstemmed | Amide Proton Transfer Imaging in Predicting Isocitrate Dehydrogenase 1 Mutation Status of Grade II/III Gliomas Based on Support Vector Machine |
title_short | Amide Proton Transfer Imaging in Predicting Isocitrate Dehydrogenase 1 Mutation Status of Grade II/III Gliomas Based on Support Vector Machine |
title_sort | amide proton transfer imaging in predicting isocitrate dehydrogenase 1 mutation status of grade ii/iii gliomas based on support vector machine |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7047712/ https://www.ncbi.nlm.nih.gov/pubmed/32153362 http://dx.doi.org/10.3389/fnins.2020.00144 |
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