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Irrelevance of USF2 rs916145 polymorphism with the risk of biliary atresia susceptibility in Southern Chinese children

Backgrounds: Biliary atresia (BA) is a very rare neonatal disease, however, it has been the most common cause of obstructive jaundice in infancy. The complex pathogenesis of BA is not entirely clear and a lot of possible pathogenic mechanisms have been proposed to explain the etiology of BA, includi...

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Autores principales: Chen, Lei, Fu, Ming, Tan, Ledong, Zhao, Jinglu, Xu, Xiaogang, Lin, Yuzhen, Zhong, Qian, Zhong, Ruisui, Zhang, RuiZhong, Zeng, Jixiao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Portland Press Ltd. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7048685/
https://www.ncbi.nlm.nih.gov/pubmed/32109289
http://dx.doi.org/10.1042/BSR20193623
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author Chen, Lei
Fu, Ming
Tan, Ledong
Zhao, Jinglu
Xu, Xiaogang
Lin, Yuzhen
Zhong, Qian
Zhong, Ruisui
Zhang, RuiZhong
Zeng, Jixiao
author_facet Chen, Lei
Fu, Ming
Tan, Ledong
Zhao, Jinglu
Xu, Xiaogang
Lin, Yuzhen
Zhong, Qian
Zhong, Ruisui
Zhang, RuiZhong
Zeng, Jixiao
author_sort Chen, Lei
collection PubMed
description Backgrounds: Biliary atresia (BA) is a very rare neonatal disease, however, it has been the most common cause of obstructive jaundice in infancy. The complex pathogenesis of BA is not entirely clear and a lot of possible pathogenic mechanisms have been proposed to explain the etiology of BA, including genetic, inflammatory, environmental and developmental abnormalities. As a transcription factor, USF2 gene rs916145 polymorphism has been shown to be related to the risk of BA. Methods: We examined the USF2 rs916145 genotype in a large case–control study consisting of 506 BA patients and 1473 healthy controls, using the MassARRAY iPLEX Gold system (Sequenom). Odds ratios (ORs) and 95% confidence intervals (CIs) were used to evaluate the association between the USF2 gene rs916145 polymorphism and BA susceptibility. Results: The frequency of different genotypes showed no statistical significance (GG/GC, OR: 1.09, P=0.470, 95% CI: 0.87–1.35; GG/CC, OR: 0.86, P=0.378, 95% CI: 0.62–1.20). No obvious association was revealed between the USF2 gene rs916145 polymorphism and BA susceptibility. Conclusion: USF2 rs916145 polymorphism may not be the best predictor of BA.
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spelling pubmed-70486852020-03-10 Irrelevance of USF2 rs916145 polymorphism with the risk of biliary atresia susceptibility in Southern Chinese children Chen, Lei Fu, Ming Tan, Ledong Zhao, Jinglu Xu, Xiaogang Lin, Yuzhen Zhong, Qian Zhong, Ruisui Zhang, RuiZhong Zeng, Jixiao Biosci Rep Bioinformatics Backgrounds: Biliary atresia (BA) is a very rare neonatal disease, however, it has been the most common cause of obstructive jaundice in infancy. The complex pathogenesis of BA is not entirely clear and a lot of possible pathogenic mechanisms have been proposed to explain the etiology of BA, including genetic, inflammatory, environmental and developmental abnormalities. As a transcription factor, USF2 gene rs916145 polymorphism has been shown to be related to the risk of BA. Methods: We examined the USF2 rs916145 genotype in a large case–control study consisting of 506 BA patients and 1473 healthy controls, using the MassARRAY iPLEX Gold system (Sequenom). Odds ratios (ORs) and 95% confidence intervals (CIs) were used to evaluate the association between the USF2 gene rs916145 polymorphism and BA susceptibility. Results: The frequency of different genotypes showed no statistical significance (GG/GC, OR: 1.09, P=0.470, 95% CI: 0.87–1.35; GG/CC, OR: 0.86, P=0.378, 95% CI: 0.62–1.20). No obvious association was revealed between the USF2 gene rs916145 polymorphism and BA susceptibility. Conclusion: USF2 rs916145 polymorphism may not be the best predictor of BA. Portland Press Ltd. 2020-02-28 /pmc/articles/PMC7048685/ /pubmed/32109289 http://dx.doi.org/10.1042/BSR20193623 Text en © 2020 The Author(s). https://creativecommons.org/licenses/by/4.0/ This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the Creative Commons Attribution License 4.0 (CC BY).
spellingShingle Bioinformatics
Chen, Lei
Fu, Ming
Tan, Ledong
Zhao, Jinglu
Xu, Xiaogang
Lin, Yuzhen
Zhong, Qian
Zhong, Ruisui
Zhang, RuiZhong
Zeng, Jixiao
Irrelevance of USF2 rs916145 polymorphism with the risk of biliary atresia susceptibility in Southern Chinese children
title Irrelevance of USF2 rs916145 polymorphism with the risk of biliary atresia susceptibility in Southern Chinese children
title_full Irrelevance of USF2 rs916145 polymorphism with the risk of biliary atresia susceptibility in Southern Chinese children
title_fullStr Irrelevance of USF2 rs916145 polymorphism with the risk of biliary atresia susceptibility in Southern Chinese children
title_full_unstemmed Irrelevance of USF2 rs916145 polymorphism with the risk of biliary atresia susceptibility in Southern Chinese children
title_short Irrelevance of USF2 rs916145 polymorphism with the risk of biliary atresia susceptibility in Southern Chinese children
title_sort irrelevance of usf2 rs916145 polymorphism with the risk of biliary atresia susceptibility in southern chinese children
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7048685/
https://www.ncbi.nlm.nih.gov/pubmed/32109289
http://dx.doi.org/10.1042/BSR20193623
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