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The aberrant expression of rhythm genes affects the genome instability and regulates the cancer immunity in pan‐cancer

Although emerging studies showed that certain rhythm genes regulate cancer progression, the expression and roles of the vast majority of rhythm genes in human cancer are largely unknown, and the hallmarks of cancer regulated by rhythm genes have not been detected. In this study, we detected the expr...

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Autores principales: Zhou, Jian, Li, Xinhui, Zhang, Minghui, Gong, Ji’nan, Li, Qi, Shan, Baocong, Wang, Tianzhen, Zhang, Lei, Zheng, Tongsen, Li, Xiaobo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7050078/
https://www.ncbi.nlm.nih.gov/pubmed/31927791
http://dx.doi.org/10.1002/cam4.2834
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author Zhou, Jian
Li, Xinhui
Zhang, Minghui
Gong, Ji’nan
Li, Qi
Shan, Baocong
Wang, Tianzhen
Zhang, Lei
Zheng, Tongsen
Li, Xiaobo
author_facet Zhou, Jian
Li, Xinhui
Zhang, Minghui
Gong, Ji’nan
Li, Qi
Shan, Baocong
Wang, Tianzhen
Zhang, Lei
Zheng, Tongsen
Li, Xiaobo
author_sort Zhou, Jian
collection PubMed
description Although emerging studies showed that certain rhythm genes regulate cancer progression, the expression and roles of the vast majority of rhythm genes in human cancer are largely unknown, and the hallmarks of cancer regulated by rhythm genes have not been detected. In this study, we detected the expression changes of rhythm genes in pan‐cancer and found that almost all rhythm genes mutated in all cancer types, and their expression level was significantly altered partially due to abnormal methylation, and several rhythm genes regulate the expression of other rhythm genes in various cancer types. Furthermore, we revealed that rhythm genes are significantly enriched in genome instability and the expression of certain rhythm genes is correlated with the tumor mutation burden, microsatellite instability, and the expression of DNA damage repair genes in most of the detected cancer types. Moreover, rhythm genes are associated with the infiltration of immune cells and the efficiency of immune blockade therapy. This study provides a comprehensive understanding of the roles of rhythm genes in cancer immunity, which may provide a novel method for the diagnosis and treatment of cancer.
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spelling pubmed-70500782020-03-05 The aberrant expression of rhythm genes affects the genome instability and regulates the cancer immunity in pan‐cancer Zhou, Jian Li, Xinhui Zhang, Minghui Gong, Ji’nan Li, Qi Shan, Baocong Wang, Tianzhen Zhang, Lei Zheng, Tongsen Li, Xiaobo Cancer Med Cancer Biology Although emerging studies showed that certain rhythm genes regulate cancer progression, the expression and roles of the vast majority of rhythm genes in human cancer are largely unknown, and the hallmarks of cancer regulated by rhythm genes have not been detected. In this study, we detected the expression changes of rhythm genes in pan‐cancer and found that almost all rhythm genes mutated in all cancer types, and their expression level was significantly altered partially due to abnormal methylation, and several rhythm genes regulate the expression of other rhythm genes in various cancer types. Furthermore, we revealed that rhythm genes are significantly enriched in genome instability and the expression of certain rhythm genes is correlated with the tumor mutation burden, microsatellite instability, and the expression of DNA damage repair genes in most of the detected cancer types. Moreover, rhythm genes are associated with the infiltration of immune cells and the efficiency of immune blockade therapy. This study provides a comprehensive understanding of the roles of rhythm genes in cancer immunity, which may provide a novel method for the diagnosis and treatment of cancer. John Wiley and Sons Inc. 2020-01-12 /pmc/articles/PMC7050078/ /pubmed/31927791 http://dx.doi.org/10.1002/cam4.2834 Text en © 2020 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Cancer Biology
Zhou, Jian
Li, Xinhui
Zhang, Minghui
Gong, Ji’nan
Li, Qi
Shan, Baocong
Wang, Tianzhen
Zhang, Lei
Zheng, Tongsen
Li, Xiaobo
The aberrant expression of rhythm genes affects the genome instability and regulates the cancer immunity in pan‐cancer
title The aberrant expression of rhythm genes affects the genome instability and regulates the cancer immunity in pan‐cancer
title_full The aberrant expression of rhythm genes affects the genome instability and regulates the cancer immunity in pan‐cancer
title_fullStr The aberrant expression of rhythm genes affects the genome instability and regulates the cancer immunity in pan‐cancer
title_full_unstemmed The aberrant expression of rhythm genes affects the genome instability and regulates the cancer immunity in pan‐cancer
title_short The aberrant expression of rhythm genes affects the genome instability and regulates the cancer immunity in pan‐cancer
title_sort aberrant expression of rhythm genes affects the genome instability and regulates the cancer immunity in pan‐cancer
topic Cancer Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7050078/
https://www.ncbi.nlm.nih.gov/pubmed/31927791
http://dx.doi.org/10.1002/cam4.2834
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