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Identification of three m6A‐related mRNAs signature and risk score for the prognostication of hepatocellular carcinoma

Hepatocellular carcinoma (HCC) is the most common type of liver cancer and is extremely harmful to human health. In recent years, N6‐methyladenosine (m6A) RNA methylation in eukaryotic mRNA has been increasingly implicated in cancer pathogenesis and prognosis. In this study, we downloaded the expres...

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Autores principales: Li, Zedong, Li, Fazhan, Peng, Yu, Fang, Jianyu, Zhou, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7050095/
https://www.ncbi.nlm.nih.gov/pubmed/31943856
http://dx.doi.org/10.1002/cam4.2833
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author Li, Zedong
Li, Fazhan
Peng, Yu
Fang, Jianyu
Zhou, Jun
author_facet Li, Zedong
Li, Fazhan
Peng, Yu
Fang, Jianyu
Zhou, Jun
author_sort Li, Zedong
collection PubMed
description Hepatocellular carcinoma (HCC) is the most common type of liver cancer and is extremely harmful to human health. In recent years, N6‐methyladenosine (m6A) RNA methylation in eukaryotic mRNA has been increasingly implicated in cancer pathogenesis and prognosis. In this study, we downloaded the expression profile and clinical information of 307 patients from The Cancer Genome Atlas database and 64 patients from the Gene Expression Omnibus (GEO) database, and univariate Cox analysis revealed that METTL14 was a prognostic m6A RNA methylation regulator. For further study on the related genes of METTL14, weighted gene co‐expression network analysis was used to find the relationship between METTL14 and gene expression, and univariate Cox analysis and least absolute shrinkage and selection operator (LASSO) methods were used to identify hub genes that may be associated with HCC prognosis. The results indicated that cysteine sulfinic acid decarboxylase, glutamic‐oxaloacetic transaminase 2, and suppressor of cytokine signaling 2 were key genes affecting the prognosis of HCC patients, and m6A methylation of these mRNAs may be regulated by METTL14. Finally, a nomogram was constructed based on the hub gene expression levels, and its prediction accuracy and discriminative ability were measured by the C‐index and a calibration curve. In conclusion, METTL14, an m6A RNA methylation regulator, may participate in the malignant progression of HCC by adjusting the m6A of cysteine sulfinic acid decarboxylase, glutamic‐oxaloacetic transaminase 2, and suppressor of cytokine signaling 2, and these genes are useful for prognostic stratification and treatment strategy development.
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spelling pubmed-70500952020-03-05 Identification of three m6A‐related mRNAs signature and risk score for the prognostication of hepatocellular carcinoma Li, Zedong Li, Fazhan Peng, Yu Fang, Jianyu Zhou, Jun Cancer Med Cancer Prevention Hepatocellular carcinoma (HCC) is the most common type of liver cancer and is extremely harmful to human health. In recent years, N6‐methyladenosine (m6A) RNA methylation in eukaryotic mRNA has been increasingly implicated in cancer pathogenesis and prognosis. In this study, we downloaded the expression profile and clinical information of 307 patients from The Cancer Genome Atlas database and 64 patients from the Gene Expression Omnibus (GEO) database, and univariate Cox analysis revealed that METTL14 was a prognostic m6A RNA methylation regulator. For further study on the related genes of METTL14, weighted gene co‐expression network analysis was used to find the relationship between METTL14 and gene expression, and univariate Cox analysis and least absolute shrinkage and selection operator (LASSO) methods were used to identify hub genes that may be associated with HCC prognosis. The results indicated that cysteine sulfinic acid decarboxylase, glutamic‐oxaloacetic transaminase 2, and suppressor of cytokine signaling 2 were key genes affecting the prognosis of HCC patients, and m6A methylation of these mRNAs may be regulated by METTL14. Finally, a nomogram was constructed based on the hub gene expression levels, and its prediction accuracy and discriminative ability were measured by the C‐index and a calibration curve. In conclusion, METTL14, an m6A RNA methylation regulator, may participate in the malignant progression of HCC by adjusting the m6A of cysteine sulfinic acid decarboxylase, glutamic‐oxaloacetic transaminase 2, and suppressor of cytokine signaling 2, and these genes are useful for prognostic stratification and treatment strategy development. John Wiley and Sons Inc. 2020-01-13 /pmc/articles/PMC7050095/ /pubmed/31943856 http://dx.doi.org/10.1002/cam4.2833 Text en © 2020 The Authors. Cancer Medicine published by John Wiley & Sons Ltd This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Cancer Prevention
Li, Zedong
Li, Fazhan
Peng, Yu
Fang, Jianyu
Zhou, Jun
Identification of three m6A‐related mRNAs signature and risk score for the prognostication of hepatocellular carcinoma
title Identification of three m6A‐related mRNAs signature and risk score for the prognostication of hepatocellular carcinoma
title_full Identification of three m6A‐related mRNAs signature and risk score for the prognostication of hepatocellular carcinoma
title_fullStr Identification of three m6A‐related mRNAs signature and risk score for the prognostication of hepatocellular carcinoma
title_full_unstemmed Identification of three m6A‐related mRNAs signature and risk score for the prognostication of hepatocellular carcinoma
title_short Identification of three m6A‐related mRNAs signature and risk score for the prognostication of hepatocellular carcinoma
title_sort identification of three m6a‐related mrnas signature and risk score for the prognostication of hepatocellular carcinoma
topic Cancer Prevention
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7050095/
https://www.ncbi.nlm.nih.gov/pubmed/31943856
http://dx.doi.org/10.1002/cam4.2833
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