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Statistical Tests for Force Inference in Heterogeneous Environments
We devise a method to detect and estimate forces in a heterogeneous environment based on experimentally recorded stochastic trajectories. In particular, we focus on systems modeled by the heterogeneous overdamped Langevin equation. Here, the observed drift includes a "spurious” force term when...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7052274/ https://www.ncbi.nlm.nih.gov/pubmed/32123194 http://dx.doi.org/10.1038/s41598-020-60220-1 |
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author | Serov, Alexander S. Laurent, François Floderer, Charlotte Perronet, Karen Favard, Cyril Muriaux, Delphine Westbrook, Nathalie Vestergaard, Christian L. Masson, Jean-Baptiste |
author_facet | Serov, Alexander S. Laurent, François Floderer, Charlotte Perronet, Karen Favard, Cyril Muriaux, Delphine Westbrook, Nathalie Vestergaard, Christian L. Masson, Jean-Baptiste |
author_sort | Serov, Alexander S. |
collection | PubMed |
description | We devise a method to detect and estimate forces in a heterogeneous environment based on experimentally recorded stochastic trajectories. In particular, we focus on systems modeled by the heterogeneous overdamped Langevin equation. Here, the observed drift includes a "spurious” force term when the diffusivity varies in space. We show how Bayesian inference can be leveraged to reliably infer forces by taking into account such spurious forces of unknown amplitude as well as experimental sources of error. The method is based on marginalizing the force posterior over all possible spurious force contributions. The approach is combined with a Bayes factor statistical test for the presence of forces. The performance of our method is investigated analytically, numerically and tested on experimental data sets. The main results are obtained in a closed form allowing for direct exploration of their properties and fast computation. The method is incorporated into TRamWAy, an open-source software platform for automated analysis of biomolecule trajectories. |
format | Online Article Text |
id | pubmed-7052274 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-70522742020-03-11 Statistical Tests for Force Inference in Heterogeneous Environments Serov, Alexander S. Laurent, François Floderer, Charlotte Perronet, Karen Favard, Cyril Muriaux, Delphine Westbrook, Nathalie Vestergaard, Christian L. Masson, Jean-Baptiste Sci Rep Article We devise a method to detect and estimate forces in a heterogeneous environment based on experimentally recorded stochastic trajectories. In particular, we focus on systems modeled by the heterogeneous overdamped Langevin equation. Here, the observed drift includes a "spurious” force term when the diffusivity varies in space. We show how Bayesian inference can be leveraged to reliably infer forces by taking into account such spurious forces of unknown amplitude as well as experimental sources of error. The method is based on marginalizing the force posterior over all possible spurious force contributions. The approach is combined with a Bayes factor statistical test for the presence of forces. The performance of our method is investigated analytically, numerically and tested on experimental data sets. The main results are obtained in a closed form allowing for direct exploration of their properties and fast computation. The method is incorporated into TRamWAy, an open-source software platform for automated analysis of biomolecule trajectories. Nature Publishing Group UK 2020-03-02 /pmc/articles/PMC7052274/ /pubmed/32123194 http://dx.doi.org/10.1038/s41598-020-60220-1 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Serov, Alexander S. Laurent, François Floderer, Charlotte Perronet, Karen Favard, Cyril Muriaux, Delphine Westbrook, Nathalie Vestergaard, Christian L. Masson, Jean-Baptiste Statistical Tests for Force Inference in Heterogeneous Environments |
title | Statistical Tests for Force Inference in Heterogeneous Environments |
title_full | Statistical Tests for Force Inference in Heterogeneous Environments |
title_fullStr | Statistical Tests for Force Inference in Heterogeneous Environments |
title_full_unstemmed | Statistical Tests for Force Inference in Heterogeneous Environments |
title_short | Statistical Tests for Force Inference in Heterogeneous Environments |
title_sort | statistical tests for force inference in heterogeneous environments |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7052274/ https://www.ncbi.nlm.nih.gov/pubmed/32123194 http://dx.doi.org/10.1038/s41598-020-60220-1 |
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