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Construction and validation of an eight-gene signature with great prognostic value in bladder cancer

Bladder cancer (BC) is one of the most common malignancies in urinary system with a common malignancy in urinary system with a high mortality and recurrence rate, so we attempt to construct a gene signature to predict the prognosis of BCs. We initially established a co-expression network by performi...

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Autores principales: Yan, Xin, Fu, Xun, Guo, Zi-Xin, Liu, Xiao-Ping, Liu, Tong-Zu, Li, Sheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Ivyspring International Publisher 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7052873/
https://www.ncbi.nlm.nih.gov/pubmed/32194788
http://dx.doi.org/10.7150/jca.38741
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author Yan, Xin
Fu, Xun
Guo, Zi-Xin
Liu, Xiao-Ping
Liu, Tong-Zu
Li, Sheng
author_facet Yan, Xin
Fu, Xun
Guo, Zi-Xin
Liu, Xiao-Ping
Liu, Tong-Zu
Li, Sheng
author_sort Yan, Xin
collection PubMed
description Bladder cancer (BC) is one of the most common malignancies in urinary system with a common malignancy in urinary system with a high mortality and recurrence rate, so we attempt to construct a gene signature to predict the prognosis of BCs. We initially established a co-expression network by performing WGCNA analysis and further identified magenta module as key module (P = 8e-05, R2 = 0.4). Subsequently, we screened 12 genes associated with survival from the key module, which were selected to construct an eight-gene signature by establishing a LASSO Cox model. Moreover, we reckoned the risk score (RS) of each sample, through which we could divide samples into two groups (the high-risk and low-risk groups) and verify the signature, in the training set and 3 validation sets (internal test set, GSE13507and E-MTAB-4321). This signature could distinguish between the high- and low- risk patients well (survival analysis: P = 0.015; AUC: 0.61 at 1 year, 0.61 at 3 years and 0.61 at 5 years). In the validation sets, this signature also showed good performance, which was consistent with the training test. Furthermore, we plotted a nomogram to predict the possibility of the overall survival (OS) and three calibration curves to predict the effectiveness of the nomogram, which suggested good value and clinical utility of the nomogram. In conclusion, we established an eight-gene signature, which was probably effective in the prediction of prognosis of patients with BC.
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spelling pubmed-70528732020-03-19 Construction and validation of an eight-gene signature with great prognostic value in bladder cancer Yan, Xin Fu, Xun Guo, Zi-Xin Liu, Xiao-Ping Liu, Tong-Zu Li, Sheng J Cancer Research Paper Bladder cancer (BC) is one of the most common malignancies in urinary system with a common malignancy in urinary system with a high mortality and recurrence rate, so we attempt to construct a gene signature to predict the prognosis of BCs. We initially established a co-expression network by performing WGCNA analysis and further identified magenta module as key module (P = 8e-05, R2 = 0.4). Subsequently, we screened 12 genes associated with survival from the key module, which were selected to construct an eight-gene signature by establishing a LASSO Cox model. Moreover, we reckoned the risk score (RS) of each sample, through which we could divide samples into two groups (the high-risk and low-risk groups) and verify the signature, in the training set and 3 validation sets (internal test set, GSE13507and E-MTAB-4321). This signature could distinguish between the high- and low- risk patients well (survival analysis: P = 0.015; AUC: 0.61 at 1 year, 0.61 at 3 years and 0.61 at 5 years). In the validation sets, this signature also showed good performance, which was consistent with the training test. Furthermore, we plotted a nomogram to predict the possibility of the overall survival (OS) and three calibration curves to predict the effectiveness of the nomogram, which suggested good value and clinical utility of the nomogram. In conclusion, we established an eight-gene signature, which was probably effective in the prediction of prognosis of patients with BC. Ivyspring International Publisher 2020-01-17 /pmc/articles/PMC7052873/ /pubmed/32194788 http://dx.doi.org/10.7150/jca.38741 Text en © The author(s) This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions.
spellingShingle Research Paper
Yan, Xin
Fu, Xun
Guo, Zi-Xin
Liu, Xiao-Ping
Liu, Tong-Zu
Li, Sheng
Construction and validation of an eight-gene signature with great prognostic value in bladder cancer
title Construction and validation of an eight-gene signature with great prognostic value in bladder cancer
title_full Construction and validation of an eight-gene signature with great prognostic value in bladder cancer
title_fullStr Construction and validation of an eight-gene signature with great prognostic value in bladder cancer
title_full_unstemmed Construction and validation of an eight-gene signature with great prognostic value in bladder cancer
title_short Construction and validation of an eight-gene signature with great prognostic value in bladder cancer
title_sort construction and validation of an eight-gene signature with great prognostic value in bladder cancer
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7052873/
https://www.ncbi.nlm.nih.gov/pubmed/32194788
http://dx.doi.org/10.7150/jca.38741
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