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Machine Learning in Prediction of Second Primary Cancer and Recurrence in Colorectal Cancer
Background: Colorectal cancer (CRC) is the third commonly diagnosed cancer worldwide. Recurrence of CRC (Re) and onset of a second primary malignancy (SPM) are important indicators in treating CRC, but it is often difficult to predict the onset of a SPM. Therefore, we used mechanical learning to ide...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Ivyspring International Publisher
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7053359/ https://www.ncbi.nlm.nih.gov/pubmed/32132862 http://dx.doi.org/10.7150/ijms.37134 |
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author | Ting, Wen-Chien Lu, Yen-Chiao Angel Ho, Wei-Chi Cheewakriangkrai, Chalong Chang, Horng-Rong Lin, Chia-Ling |
author_facet | Ting, Wen-Chien Lu, Yen-Chiao Angel Ho, Wei-Chi Cheewakriangkrai, Chalong Chang, Horng-Rong Lin, Chia-Ling |
author_sort | Ting, Wen-Chien |
collection | PubMed |
description | Background: Colorectal cancer (CRC) is the third commonly diagnosed cancer worldwide. Recurrence of CRC (Re) and onset of a second primary malignancy (SPM) are important indicators in treating CRC, but it is often difficult to predict the onset of a SPM. Therefore, we used mechanical learning to identify risk factors that affect Re and SPM. Patient and Methods: CRC patients with cancer registry database at three medical centers were identified. All patients were classified based on Re or no recurrence (NRe) as well as SPM or no SPM (NSPM). Two classifiers, namely A Library for Support Vector Machines (LIBSVM) and Reduced Error Pruning Tree (REPTree), were applied to analyze the relationship between clinical features and Re and/or SPM category by constructing optimized models. Results: When Re and SPM were evaluated separately, the accuracy of LIBSVM was 0.878 and that of REPTree was 0.622. When Re and SPM were evaluated in combination, the precision of models for SPM+Re, NSPM+Re, SPM+NRe, and NSPM+NRe was 0.878, 0.662, 0.774, and 0.778, respectively. Conclusions: Machine learning can be used to rank factors affecting tumor Re and SPM. In clinical practice, routine checkups are necessary to ensure early detection of new tumors. The success of prediction and early detection may be enhanced in the future by applying “big data” analysis methods such as machine learning. |
format | Online Article Text |
id | pubmed-7053359 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Ivyspring International Publisher |
record_format | MEDLINE/PubMed |
spelling | pubmed-70533592020-03-04 Machine Learning in Prediction of Second Primary Cancer and Recurrence in Colorectal Cancer Ting, Wen-Chien Lu, Yen-Chiao Angel Ho, Wei-Chi Cheewakriangkrai, Chalong Chang, Horng-Rong Lin, Chia-Ling Int J Med Sci Research Paper Background: Colorectal cancer (CRC) is the third commonly diagnosed cancer worldwide. Recurrence of CRC (Re) and onset of a second primary malignancy (SPM) are important indicators in treating CRC, but it is often difficult to predict the onset of a SPM. Therefore, we used mechanical learning to identify risk factors that affect Re and SPM. Patient and Methods: CRC patients with cancer registry database at three medical centers were identified. All patients were classified based on Re or no recurrence (NRe) as well as SPM or no SPM (NSPM). Two classifiers, namely A Library for Support Vector Machines (LIBSVM) and Reduced Error Pruning Tree (REPTree), were applied to analyze the relationship between clinical features and Re and/or SPM category by constructing optimized models. Results: When Re and SPM were evaluated separately, the accuracy of LIBSVM was 0.878 and that of REPTree was 0.622. When Re and SPM were evaluated in combination, the precision of models for SPM+Re, NSPM+Re, SPM+NRe, and NSPM+NRe was 0.878, 0.662, 0.774, and 0.778, respectively. Conclusions: Machine learning can be used to rank factors affecting tumor Re and SPM. In clinical practice, routine checkups are necessary to ensure early detection of new tumors. The success of prediction and early detection may be enhanced in the future by applying “big data” analysis methods such as machine learning. Ivyspring International Publisher 2020-01-15 /pmc/articles/PMC7053359/ /pubmed/32132862 http://dx.doi.org/10.7150/ijms.37134 Text en © The author(s) This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions. |
spellingShingle | Research Paper Ting, Wen-Chien Lu, Yen-Chiao Angel Ho, Wei-Chi Cheewakriangkrai, Chalong Chang, Horng-Rong Lin, Chia-Ling Machine Learning in Prediction of Second Primary Cancer and Recurrence in Colorectal Cancer |
title | Machine Learning in Prediction of Second Primary Cancer and Recurrence in Colorectal Cancer |
title_full | Machine Learning in Prediction of Second Primary Cancer and Recurrence in Colorectal Cancer |
title_fullStr | Machine Learning in Prediction of Second Primary Cancer and Recurrence in Colorectal Cancer |
title_full_unstemmed | Machine Learning in Prediction of Second Primary Cancer and Recurrence in Colorectal Cancer |
title_short | Machine Learning in Prediction of Second Primary Cancer and Recurrence in Colorectal Cancer |
title_sort | machine learning in prediction of second primary cancer and recurrence in colorectal cancer |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7053359/ https://www.ncbi.nlm.nih.gov/pubmed/32132862 http://dx.doi.org/10.7150/ijms.37134 |
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