Cargando…

De novo Transcriptome Reveals Gene Changes in the Development of the Endosperm Chalazal Haustorium in Taxillus chinensis (DC.) Danser

Loranthus (Taxillus chinensis) is a facultative, hemiparasite and stem parasitic plant that attacks other plants for living. Transcriptome sequencing and bioinformatics analysis were applied in this study to identify the gene expression profiles of fresh seeds (CK), baby (FB), and adult haustoria ti...

Descripción completa

Detalles Bibliográficos
Autores principales: Wei, Shugen, Wan, Lingyun, He, Lili, Wei, Ying, Long, Hairong, Ji, Xiaowen, Fu, Jine, Pan, Limei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7053452/
https://www.ncbi.nlm.nih.gov/pubmed/32149138
http://dx.doi.org/10.1155/2020/7871918
_version_ 1783503042912452608
author Wei, Shugen
Wan, Lingyun
He, Lili
Wei, Ying
Long, Hairong
Ji, Xiaowen
Fu, Jine
Pan, Limei
author_facet Wei, Shugen
Wan, Lingyun
He, Lili
Wei, Ying
Long, Hairong
Ji, Xiaowen
Fu, Jine
Pan, Limei
author_sort Wei, Shugen
collection PubMed
description Loranthus (Taxillus chinensis) is a facultative, hemiparasite and stem parasitic plant that attacks other plants for living. Transcriptome sequencing and bioinformatics analysis were applied in this study to identify the gene expression profiles of fresh seeds (CK), baby (FB), and adult haustoria tissues (FD). We assembled 160,571 loranthus genes, of which 64,926, 35,417, and 47,249 were aligned to NR, GO, and KEGG pathway databases, respectively. We identified 14,295, 15,921, and 16,402 genes in CK, FB, and FD, respectively. We next identified 5,480 differentially expressed genes (DEGs) in the process, of which 258, 174, 81, and 94 were encoding ribosomal proteins (RP), transcription factors (TF), ubiquitin, and disease resistance proteins, respectively. Some DEGs were identified to be upregulated along with the haustoria development (e.g., 68 RP and 26 ubiquitin genes). Notably, 36 RP DEGs peak at FB; 10 ER, 5 WRKY, 6 bHLH, and 4 MYB TF genes upregulated only in FD. Further, we identified 4 out of 32 microRNA genes dysregulated in the loranthus haustoria development. This is the first haustoria transcriptome of loranthus, and our findings will improve our understanding of the molecular mechanism of haustoria.
format Online
Article
Text
id pubmed-7053452
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Hindawi
record_format MEDLINE/PubMed
spelling pubmed-70534522020-03-08 De novo Transcriptome Reveals Gene Changes in the Development of the Endosperm Chalazal Haustorium in Taxillus chinensis (DC.) Danser Wei, Shugen Wan, Lingyun He, Lili Wei, Ying Long, Hairong Ji, Xiaowen Fu, Jine Pan, Limei Biomed Res Int Research Article Loranthus (Taxillus chinensis) is a facultative, hemiparasite and stem parasitic plant that attacks other plants for living. Transcriptome sequencing and bioinformatics analysis were applied in this study to identify the gene expression profiles of fresh seeds (CK), baby (FB), and adult haustoria tissues (FD). We assembled 160,571 loranthus genes, of which 64,926, 35,417, and 47,249 were aligned to NR, GO, and KEGG pathway databases, respectively. We identified 14,295, 15,921, and 16,402 genes in CK, FB, and FD, respectively. We next identified 5,480 differentially expressed genes (DEGs) in the process, of which 258, 174, 81, and 94 were encoding ribosomal proteins (RP), transcription factors (TF), ubiquitin, and disease resistance proteins, respectively. Some DEGs were identified to be upregulated along with the haustoria development (e.g., 68 RP and 26 ubiquitin genes). Notably, 36 RP DEGs peak at FB; 10 ER, 5 WRKY, 6 bHLH, and 4 MYB TF genes upregulated only in FD. Further, we identified 4 out of 32 microRNA genes dysregulated in the loranthus haustoria development. This is the first haustoria transcriptome of loranthus, and our findings will improve our understanding of the molecular mechanism of haustoria. Hindawi 2020-02-18 /pmc/articles/PMC7053452/ /pubmed/32149138 http://dx.doi.org/10.1155/2020/7871918 Text en Copyright © 2020 Shugen Wei et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Wei, Shugen
Wan, Lingyun
He, Lili
Wei, Ying
Long, Hairong
Ji, Xiaowen
Fu, Jine
Pan, Limei
De novo Transcriptome Reveals Gene Changes in the Development of the Endosperm Chalazal Haustorium in Taxillus chinensis (DC.) Danser
title De novo Transcriptome Reveals Gene Changes in the Development of the Endosperm Chalazal Haustorium in Taxillus chinensis (DC.) Danser
title_full De novo Transcriptome Reveals Gene Changes in the Development of the Endosperm Chalazal Haustorium in Taxillus chinensis (DC.) Danser
title_fullStr De novo Transcriptome Reveals Gene Changes in the Development of the Endosperm Chalazal Haustorium in Taxillus chinensis (DC.) Danser
title_full_unstemmed De novo Transcriptome Reveals Gene Changes in the Development of the Endosperm Chalazal Haustorium in Taxillus chinensis (DC.) Danser
title_short De novo Transcriptome Reveals Gene Changes in the Development of the Endosperm Chalazal Haustorium in Taxillus chinensis (DC.) Danser
title_sort de novo transcriptome reveals gene changes in the development of the endosperm chalazal haustorium in taxillus chinensis (dc.) danser
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7053452/
https://www.ncbi.nlm.nih.gov/pubmed/32149138
http://dx.doi.org/10.1155/2020/7871918
work_keys_str_mv AT weishugen denovotranscriptomerevealsgenechangesinthedevelopmentoftheendospermchalazalhaustoriumintaxilluschinensisdcdanser
AT wanlingyun denovotranscriptomerevealsgenechangesinthedevelopmentoftheendospermchalazalhaustoriumintaxilluschinensisdcdanser
AT helili denovotranscriptomerevealsgenechangesinthedevelopmentoftheendospermchalazalhaustoriumintaxilluschinensisdcdanser
AT weiying denovotranscriptomerevealsgenechangesinthedevelopmentoftheendospermchalazalhaustoriumintaxilluschinensisdcdanser
AT longhairong denovotranscriptomerevealsgenechangesinthedevelopmentoftheendospermchalazalhaustoriumintaxilluschinensisdcdanser
AT jixiaowen denovotranscriptomerevealsgenechangesinthedevelopmentoftheendospermchalazalhaustoriumintaxilluschinensisdcdanser
AT fujine denovotranscriptomerevealsgenechangesinthedevelopmentoftheendospermchalazalhaustoriumintaxilluschinensisdcdanser
AT panlimei denovotranscriptomerevealsgenechangesinthedevelopmentoftheendospermchalazalhaustoriumintaxilluschinensisdcdanser