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Optimized criteria for locomotion-based healthspan evaluation in C. elegans using the WorMotel system

Getting a grip on how we may age healthily is a central interest of biogerontological research. To this end, a number of academic teams developed platforms for life- and healthspan assessment in Caenorhabditis elegans. These are very appealing for medium- to high throughput screens, but a broader im...

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Detalles Bibliográficos
Autores principales: Jushaj, Areta, Churgin, Matthew, Yao, Bowen, De La Torre, Miguel, Fang-Yen, Christopher, Temmerman, Liesbet
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7053758/
https://www.ncbi.nlm.nih.gov/pubmed/32126105
http://dx.doi.org/10.1371/journal.pone.0229583
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author Jushaj, Areta
Churgin, Matthew
Yao, Bowen
De La Torre, Miguel
Fang-Yen, Christopher
Temmerman, Liesbet
author_facet Jushaj, Areta
Churgin, Matthew
Yao, Bowen
De La Torre, Miguel
Fang-Yen, Christopher
Temmerman, Liesbet
author_sort Jushaj, Areta
collection PubMed
description Getting a grip on how we may age healthily is a central interest of biogerontological research. To this end, a number of academic teams developed platforms for life- and healthspan assessment in Caenorhabditis elegans. These are very appealing for medium- to high throughput screens, but a broader implementation is lacking due to many systems relying on custom scripts for data analysis that others struggle to adopt. Hence, user-friendly recommendations would help to translate raw data into interpretable results. The aim of this communication is to streamline the analysis of data obtained by the WorMotel, an economically and practically appealing screening platform, in order to facilitate the use of this system by interested researchers. We here detail recommendations for the stepwise conversion of raw image data into activity values and explain criteria for assessment of health in C. elegans based on locomotion. Our analysis protocol can easily be adopted by researchers, and all needed scripts and a tutorial are available in S1 and S2 Files.
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spelling pubmed-70537582020-03-12 Optimized criteria for locomotion-based healthspan evaluation in C. elegans using the WorMotel system Jushaj, Areta Churgin, Matthew Yao, Bowen De La Torre, Miguel Fang-Yen, Christopher Temmerman, Liesbet PLoS One Research Article Getting a grip on how we may age healthily is a central interest of biogerontological research. To this end, a number of academic teams developed platforms for life- and healthspan assessment in Caenorhabditis elegans. These are very appealing for medium- to high throughput screens, but a broader implementation is lacking due to many systems relying on custom scripts for data analysis that others struggle to adopt. Hence, user-friendly recommendations would help to translate raw data into interpretable results. The aim of this communication is to streamline the analysis of data obtained by the WorMotel, an economically and practically appealing screening platform, in order to facilitate the use of this system by interested researchers. We here detail recommendations for the stepwise conversion of raw image data into activity values and explain criteria for assessment of health in C. elegans based on locomotion. Our analysis protocol can easily be adopted by researchers, and all needed scripts and a tutorial are available in S1 and S2 Files. Public Library of Science 2020-03-03 /pmc/articles/PMC7053758/ /pubmed/32126105 http://dx.doi.org/10.1371/journal.pone.0229583 Text en © 2020 Jushaj et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Jushaj, Areta
Churgin, Matthew
Yao, Bowen
De La Torre, Miguel
Fang-Yen, Christopher
Temmerman, Liesbet
Optimized criteria for locomotion-based healthspan evaluation in C. elegans using the WorMotel system
title Optimized criteria for locomotion-based healthspan evaluation in C. elegans using the WorMotel system
title_full Optimized criteria for locomotion-based healthspan evaluation in C. elegans using the WorMotel system
title_fullStr Optimized criteria for locomotion-based healthspan evaluation in C. elegans using the WorMotel system
title_full_unstemmed Optimized criteria for locomotion-based healthspan evaluation in C. elegans using the WorMotel system
title_short Optimized criteria for locomotion-based healthspan evaluation in C. elegans using the WorMotel system
title_sort optimized criteria for locomotion-based healthspan evaluation in c. elegans using the wormotel system
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7053758/
https://www.ncbi.nlm.nih.gov/pubmed/32126105
http://dx.doi.org/10.1371/journal.pone.0229583
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