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Reaction diffusion system prediction based on convolutional neural network
The reaction-diffusion system is naturally used in chemistry to represent substances reacting and diffusing over the spatial domain. Its solution illustrates the underlying process of a chemical reaction and displays diverse spatial patterns of the substances. Numerical methods like finite element m...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7054402/ https://www.ncbi.nlm.nih.gov/pubmed/32127569 http://dx.doi.org/10.1038/s41598-020-60853-2 |
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author | Li, Angran Chen, Ruijia Farimani, Amir Barati Zhang, Yongjie Jessica |
author_facet | Li, Angran Chen, Ruijia Farimani, Amir Barati Zhang, Yongjie Jessica |
author_sort | Li, Angran |
collection | PubMed |
description | The reaction-diffusion system is naturally used in chemistry to represent substances reacting and diffusing over the spatial domain. Its solution illustrates the underlying process of a chemical reaction and displays diverse spatial patterns of the substances. Numerical methods like finite element method (FEM) are widely used to derive the approximate solution for the reaction-diffusion system. However, these methods require long computation time and huge computation resources when the system becomes complex. In this paper, we study the physics of a two-dimensional one-component reaction-diffusion system by using machine learning. An encoder-decoder based convolutional neural network (CNN) is designed and trained to directly predict the concentration distribution, bypassing the expensive FEM calculation process. Different simulation parameters, boundary conditions, geometry configurations and time are considered as the input features of the proposed learning model. In particular, the trained CNN model manages to learn the time-dependent behaviour of the reaction-diffusion system through the input time feature. Thus, the model is capable of providing concentration prediction at certain time directly with high test accuracy (mean relative error <3.04%) and 300 times faster than the traditional FEM. Our CNN-based learning model provides a rapid and accurate tool for predicting the concentration distribution of the reaction-diffusion system. |
format | Online Article Text |
id | pubmed-7054402 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-70544022020-03-11 Reaction diffusion system prediction based on convolutional neural network Li, Angran Chen, Ruijia Farimani, Amir Barati Zhang, Yongjie Jessica Sci Rep Article The reaction-diffusion system is naturally used in chemistry to represent substances reacting and diffusing over the spatial domain. Its solution illustrates the underlying process of a chemical reaction and displays diverse spatial patterns of the substances. Numerical methods like finite element method (FEM) are widely used to derive the approximate solution for the reaction-diffusion system. However, these methods require long computation time and huge computation resources when the system becomes complex. In this paper, we study the physics of a two-dimensional one-component reaction-diffusion system by using machine learning. An encoder-decoder based convolutional neural network (CNN) is designed and trained to directly predict the concentration distribution, bypassing the expensive FEM calculation process. Different simulation parameters, boundary conditions, geometry configurations and time are considered as the input features of the proposed learning model. In particular, the trained CNN model manages to learn the time-dependent behaviour of the reaction-diffusion system through the input time feature. Thus, the model is capable of providing concentration prediction at certain time directly with high test accuracy (mean relative error <3.04%) and 300 times faster than the traditional FEM. Our CNN-based learning model provides a rapid and accurate tool for predicting the concentration distribution of the reaction-diffusion system. Nature Publishing Group UK 2020-03-03 /pmc/articles/PMC7054402/ /pubmed/32127569 http://dx.doi.org/10.1038/s41598-020-60853-2 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Li, Angran Chen, Ruijia Farimani, Amir Barati Zhang, Yongjie Jessica Reaction diffusion system prediction based on convolutional neural network |
title | Reaction diffusion system prediction based on convolutional neural network |
title_full | Reaction diffusion system prediction based on convolutional neural network |
title_fullStr | Reaction diffusion system prediction based on convolutional neural network |
title_full_unstemmed | Reaction diffusion system prediction based on convolutional neural network |
title_short | Reaction diffusion system prediction based on convolutional neural network |
title_sort | reaction diffusion system prediction based on convolutional neural network |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7054402/ https://www.ncbi.nlm.nih.gov/pubmed/32127569 http://dx.doi.org/10.1038/s41598-020-60853-2 |
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