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Assessment of Mixed Sward Using Context Sensitive Convolutional Neural Networks

Breeding higher yielding forage species is limited by current manual harvesting and visual scoring techniques used for measuring or estimation of biomass. Automation and remote sensing for high throughput phenotyping has been used in recent years as a viable solution to this bottleneck. Here, we foc...

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Autores principales: Bateman, Christopher J., Fourie, Jaco, Hsiao, Jeffrey, Irie, Kenji, Heslop, Angus, Hilditch, Anthony, Hagedorn, Michael, Jessep, Bruce, Gebbie, Steve, Ghamkhar, Kioumars
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7056886/
https://www.ncbi.nlm.nih.gov/pubmed/32174941
http://dx.doi.org/10.3389/fpls.2020.00159
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author Bateman, Christopher J.
Fourie, Jaco
Hsiao, Jeffrey
Irie, Kenji
Heslop, Angus
Hilditch, Anthony
Hagedorn, Michael
Jessep, Bruce
Gebbie, Steve
Ghamkhar, Kioumars
author_facet Bateman, Christopher J.
Fourie, Jaco
Hsiao, Jeffrey
Irie, Kenji
Heslop, Angus
Hilditch, Anthony
Hagedorn, Michael
Jessep, Bruce
Gebbie, Steve
Ghamkhar, Kioumars
author_sort Bateman, Christopher J.
collection PubMed
description Breeding higher yielding forage species is limited by current manual harvesting and visual scoring techniques used for measuring or estimation of biomass. Automation and remote sensing for high throughput phenotyping has been used in recent years as a viable solution to this bottleneck. Here, we focus on using RGB imaging and deep learning for white clover (Trifolium repens L.) and perennial ryegrass (Lolium perenne L.) yield estimation in a mixed sward. We present a new convolutional neural network (CNN) architecture designed for semantic segmentation of dense pasture and canopies with high occlusion to which we have named the local context network (LC-Net). On our testing data set we obtain a mean accuracy of 95.4% and a mean intersection over union of 81.3%, outperforming other methods we have found in the literature for segmenting clover from ryegrass. Comparing the clover/vegetation fraction for visual coverage and harvested dry-matter however showed little improvement from the segmentation accuracy gains. Further gains in biomass estimation accuracy may be achievable through combining RGB with complimentary information such as volumetric data from other sensors, which will form the basis of our future work.
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spelling pubmed-70568862020-03-13 Assessment of Mixed Sward Using Context Sensitive Convolutional Neural Networks Bateman, Christopher J. Fourie, Jaco Hsiao, Jeffrey Irie, Kenji Heslop, Angus Hilditch, Anthony Hagedorn, Michael Jessep, Bruce Gebbie, Steve Ghamkhar, Kioumars Front Plant Sci Plant Science Breeding higher yielding forage species is limited by current manual harvesting and visual scoring techniques used for measuring or estimation of biomass. Automation and remote sensing for high throughput phenotyping has been used in recent years as a viable solution to this bottleneck. Here, we focus on using RGB imaging and deep learning for white clover (Trifolium repens L.) and perennial ryegrass (Lolium perenne L.) yield estimation in a mixed sward. We present a new convolutional neural network (CNN) architecture designed for semantic segmentation of dense pasture and canopies with high occlusion to which we have named the local context network (LC-Net). On our testing data set we obtain a mean accuracy of 95.4% and a mean intersection over union of 81.3%, outperforming other methods we have found in the literature for segmenting clover from ryegrass. Comparing the clover/vegetation fraction for visual coverage and harvested dry-matter however showed little improvement from the segmentation accuracy gains. Further gains in biomass estimation accuracy may be achievable through combining RGB with complimentary information such as volumetric data from other sensors, which will form the basis of our future work. Frontiers Media S.A. 2020-02-27 /pmc/articles/PMC7056886/ /pubmed/32174941 http://dx.doi.org/10.3389/fpls.2020.00159 Text en Copyright © 2020 Bateman, Fourie, Hsiao, Irie, Heslop, Hilditch, Hagedorn, Jessep, Gebbie and Ghamkhar http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Bateman, Christopher J.
Fourie, Jaco
Hsiao, Jeffrey
Irie, Kenji
Heslop, Angus
Hilditch, Anthony
Hagedorn, Michael
Jessep, Bruce
Gebbie, Steve
Ghamkhar, Kioumars
Assessment of Mixed Sward Using Context Sensitive Convolutional Neural Networks
title Assessment of Mixed Sward Using Context Sensitive Convolutional Neural Networks
title_full Assessment of Mixed Sward Using Context Sensitive Convolutional Neural Networks
title_fullStr Assessment of Mixed Sward Using Context Sensitive Convolutional Neural Networks
title_full_unstemmed Assessment of Mixed Sward Using Context Sensitive Convolutional Neural Networks
title_short Assessment of Mixed Sward Using Context Sensitive Convolutional Neural Networks
title_sort assessment of mixed sward using context sensitive convolutional neural networks
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7056886/
https://www.ncbi.nlm.nih.gov/pubmed/32174941
http://dx.doi.org/10.3389/fpls.2020.00159
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