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Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 1-(1,3-benzothiazol-2-yl)-3-(2-hydroxyethyl)imidazolidin-2-one
In the title molecule, C(12)H(13)N(3)O(2)S, the benzothiazine moiety is slightly non-planar, with the imidazolidine portion twisted only a few degrees out of the mean plane of the former. In the crystal, a layer structure parallel to the bc plane is formed by a combination of O—H(Hydethy)⋯N(Thz)...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7057389/ https://www.ncbi.nlm.nih.gov/pubmed/32148878 http://dx.doi.org/10.1107/S2056989020001723 |
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author | Srhir, Mohamed Sebbar, Nada Kheira Hökelek, Tuncer Moussaif, Ahmed Mague, Joel T. Hamou Ahabchane, Noureddine Essassi, El Mokhtar |
author_facet | Srhir, Mohamed Sebbar, Nada Kheira Hökelek, Tuncer Moussaif, Ahmed Mague, Joel T. Hamou Ahabchane, Noureddine Essassi, El Mokhtar |
author_sort | Srhir, Mohamed |
collection | PubMed |
description | In the title molecule, C(12)H(13)N(3)O(2)S, the benzothiazine moiety is slightly non-planar, with the imidazolidine portion twisted only a few degrees out of the mean plane of the former. In the crystal, a layer structure parallel to the bc plane is formed by a combination of O—H(Hydethy)⋯N(Thz) hydrogen bonds and weak C—H(Imdz)⋯O(Imdz) and C—H(Bnz)⋯O(Imdz) (Hydethy = hydroxyethyl, Thz = thiazole, Imdz = imidazolidine and Bnz = benzene) interactions, together with C—H(Imdz)⋯π(ring) and head-to-tail slipped π-stacking [centroid-to-centroid distances = 3.6507 (7) and 3.6866 (7) Å] interactions between thiazole rings. The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the crystal packing are from H⋯H (47.0%), H⋯O/O⋯H (16.9%), H⋯C/C⋯H (8.0%) and H⋯S/S⋯H (7.6%) interactions. Hydrogen bonding and van der Waals interactions are the dominant interactions in the crystal packing. Computational chemistry indicates that in the crystal, C—H⋯N and C—H⋯O hydrogen-bond energies are 68.5 (for O—H(Hydethy)⋯N(Thz)), 60.1 (for C—H(Bnz)⋯O(Imdz)) and 41.8 kJ mol(−1) (for C—H(Imdz)⋯O(Imdz)). Density functional theory (DFT) optimized structures at the B3LYP/6–311 G(d,p) level are compared with the experimentally determined molecular structure in the solid state. |
format | Online Article Text |
id | pubmed-7057389 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-70573892020-03-06 Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 1-(1,3-benzothiazol-2-yl)-3-(2-hydroxyethyl)imidazolidin-2-one Srhir, Mohamed Sebbar, Nada Kheira Hökelek, Tuncer Moussaif, Ahmed Mague, Joel T. Hamou Ahabchane, Noureddine Essassi, El Mokhtar Acta Crystallogr E Crystallogr Commun Research Communications In the title molecule, C(12)H(13)N(3)O(2)S, the benzothiazine moiety is slightly non-planar, with the imidazolidine portion twisted only a few degrees out of the mean plane of the former. In the crystal, a layer structure parallel to the bc plane is formed by a combination of O—H(Hydethy)⋯N(Thz) hydrogen bonds and weak C—H(Imdz)⋯O(Imdz) and C—H(Bnz)⋯O(Imdz) (Hydethy = hydroxyethyl, Thz = thiazole, Imdz = imidazolidine and Bnz = benzene) interactions, together with C—H(Imdz)⋯π(ring) and head-to-tail slipped π-stacking [centroid-to-centroid distances = 3.6507 (7) and 3.6866 (7) Å] interactions between thiazole rings. The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the crystal packing are from H⋯H (47.0%), H⋯O/O⋯H (16.9%), H⋯C/C⋯H (8.0%) and H⋯S/S⋯H (7.6%) interactions. Hydrogen bonding and van der Waals interactions are the dominant interactions in the crystal packing. Computational chemistry indicates that in the crystal, C—H⋯N and C—H⋯O hydrogen-bond energies are 68.5 (for O—H(Hydethy)⋯N(Thz)), 60.1 (for C—H(Bnz)⋯O(Imdz)) and 41.8 kJ mol(−1) (for C—H(Imdz)⋯O(Imdz)). Density functional theory (DFT) optimized structures at the B3LYP/6–311 G(d,p) level are compared with the experimentally determined molecular structure in the solid state. International Union of Crystallography 2020-02-14 /pmc/articles/PMC7057389/ /pubmed/32148878 http://dx.doi.org/10.1107/S2056989020001723 Text en © Srhir et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Communications Srhir, Mohamed Sebbar, Nada Kheira Hökelek, Tuncer Moussaif, Ahmed Mague, Joel T. Hamou Ahabchane, Noureddine Essassi, El Mokhtar Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 1-(1,3-benzothiazol-2-yl)-3-(2-hydroxyethyl)imidazolidin-2-one |
title | Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 1-(1,3-benzothiazol-2-yl)-3-(2-hydroxyethyl)imidazolidin-2-one |
title_full | Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 1-(1,3-benzothiazol-2-yl)-3-(2-hydroxyethyl)imidazolidin-2-one |
title_fullStr | Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 1-(1,3-benzothiazol-2-yl)-3-(2-hydroxyethyl)imidazolidin-2-one |
title_full_unstemmed | Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 1-(1,3-benzothiazol-2-yl)-3-(2-hydroxyethyl)imidazolidin-2-one |
title_short | Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 1-(1,3-benzothiazol-2-yl)-3-(2-hydroxyethyl)imidazolidin-2-one |
title_sort | crystal structure, hirshfeld surface analysis and interaction energy and dft studies of 1-(1,3-benzothiazol-2-yl)-3-(2-hydroxyethyl)imidazolidin-2-one |
topic | Research Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7057389/ https://www.ncbi.nlm.nih.gov/pubmed/32148878 http://dx.doi.org/10.1107/S2056989020001723 |
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