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Circular RNAs are abundant and dynamically expressed during the embryonic lung development of C57BL/6 mice

Circular RNAs (circRNAs), a novel type of endogenous RNAs, can function as microRNA (miRNA) sponges capable of regulating gene transcription, binding to RNA-associated proteins, and even encoding proteins. CircRNAs are involved in various cell behaviors, such as proliferation and apoptosis. The mous...

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Autores principales: Zhang, Meng-Jie, Yin, Jiang-Wen, Wu, Jin-Huan, Gu, Jie, Yuan, Cai-Yun, Miao, Hong-Jun, Yu, Zhang-Bin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7058915/
https://www.ncbi.nlm.nih.gov/pubmed/32154408
http://dx.doi.org/10.1016/j.heliyon.2020.e03437
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author Zhang, Meng-Jie
Yin, Jiang-Wen
Wu, Jin-Huan
Gu, Jie
Yuan, Cai-Yun
Miao, Hong-Jun
Yu, Zhang-Bin
author_facet Zhang, Meng-Jie
Yin, Jiang-Wen
Wu, Jin-Huan
Gu, Jie
Yuan, Cai-Yun
Miao, Hong-Jun
Yu, Zhang-Bin
author_sort Zhang, Meng-Jie
collection PubMed
description Circular RNAs (circRNAs), a novel type of endogenous RNAs, can function as microRNA (miRNA) sponges capable of regulating gene transcription, binding to RNA-associated proteins, and even encoding proteins. CircRNAs are involved in various cell behaviors, such as proliferation and apoptosis. The mouse model has also been demonstrated to be similar to that of humans in many studies. To explore the profile of circRNAs during embryonic lung development and their potential functions in lung development-related diseases, mouse embryos at the pseudoglandular phase, canalicular phase, saccular phase, and alveolar phase were collected. High-throughput sequencing was then used to identify a total of 1,735 circRNAs (junction reads ≥5 and p < 0.05). It is well known that the functions of circRNAs are related to host genes. In our study, bioinformatics analysis indicated that the screened host genes were closely associated with lung development and included the Hippo signaling pathway, PI3K-Akt signaling pathways, and TGF-β signaling pathways. Moreover, miRNA sponges are another mechanism involved in lung development. Therefore, we predicted many miRNAs binding to circRNAs, such as miR-17 and miR-20, using the TargetScan and miRanda databases. Previously, miRNAs were proven to be necessary for lung development. The peak expression of circRNAs is distributed at different time points, suggesting their involvement in different stages of embryonic mouse lung development.
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spelling pubmed-70589152020-03-09 Circular RNAs are abundant and dynamically expressed during the embryonic lung development of C57BL/6 mice Zhang, Meng-Jie Yin, Jiang-Wen Wu, Jin-Huan Gu, Jie Yuan, Cai-Yun Miao, Hong-Jun Yu, Zhang-Bin Heliyon Article Circular RNAs (circRNAs), a novel type of endogenous RNAs, can function as microRNA (miRNA) sponges capable of regulating gene transcription, binding to RNA-associated proteins, and even encoding proteins. CircRNAs are involved in various cell behaviors, such as proliferation and apoptosis. The mouse model has also been demonstrated to be similar to that of humans in many studies. To explore the profile of circRNAs during embryonic lung development and their potential functions in lung development-related diseases, mouse embryos at the pseudoglandular phase, canalicular phase, saccular phase, and alveolar phase were collected. High-throughput sequencing was then used to identify a total of 1,735 circRNAs (junction reads ≥5 and p < 0.05). It is well known that the functions of circRNAs are related to host genes. In our study, bioinformatics analysis indicated that the screened host genes were closely associated with lung development and included the Hippo signaling pathway, PI3K-Akt signaling pathways, and TGF-β signaling pathways. Moreover, miRNA sponges are another mechanism involved in lung development. Therefore, we predicted many miRNAs binding to circRNAs, such as miR-17 and miR-20, using the TargetScan and miRanda databases. Previously, miRNAs were proven to be necessary for lung development. The peak expression of circRNAs is distributed at different time points, suggesting their involvement in different stages of embryonic mouse lung development. Elsevier 2020-03-05 /pmc/articles/PMC7058915/ /pubmed/32154408 http://dx.doi.org/10.1016/j.heliyon.2020.e03437 Text en © 2020 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Zhang, Meng-Jie
Yin, Jiang-Wen
Wu, Jin-Huan
Gu, Jie
Yuan, Cai-Yun
Miao, Hong-Jun
Yu, Zhang-Bin
Circular RNAs are abundant and dynamically expressed during the embryonic lung development of C57BL/6 mice
title Circular RNAs are abundant and dynamically expressed during the embryonic lung development of C57BL/6 mice
title_full Circular RNAs are abundant and dynamically expressed during the embryonic lung development of C57BL/6 mice
title_fullStr Circular RNAs are abundant and dynamically expressed during the embryonic lung development of C57BL/6 mice
title_full_unstemmed Circular RNAs are abundant and dynamically expressed during the embryonic lung development of C57BL/6 mice
title_short Circular RNAs are abundant and dynamically expressed during the embryonic lung development of C57BL/6 mice
title_sort circular rnas are abundant and dynamically expressed during the embryonic lung development of c57bl/6 mice
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7058915/
https://www.ncbi.nlm.nih.gov/pubmed/32154408
http://dx.doi.org/10.1016/j.heliyon.2020.e03437
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