Cargando…

Novel myocardial markers GADD45G and NDUFS5 identified by RNA-sequencing predicts left ventricular reverse remodeling in advanced non-ischemic heart failure: a retrospective cohort study

BACKGROUND: Left ventricular reverse remodeling (LVRR) has been detected in non-ischemic dilated cardiomyopathy (NIDCM) patients following optimal treatment. However, its prediction with only conventional modalities is often difficult. This study sought to examine whether RNA sequencing (RNA-seq) of...

Descripción completa

Detalles Bibliográficos
Autores principales: Iwahana, Togo, Okada, Sho, Kanda, Masato, Oshima, Motohiko, Iwama, Atsushi, Matsumiya, Goro, Kobayashi, Yoshio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7059273/
https://www.ncbi.nlm.nih.gov/pubmed/32138671
http://dx.doi.org/10.1186/s12872-020-01396-2
_version_ 1783504015066136576
author Iwahana, Togo
Okada, Sho
Kanda, Masato
Oshima, Motohiko
Iwama, Atsushi
Matsumiya, Goro
Kobayashi, Yoshio
author_facet Iwahana, Togo
Okada, Sho
Kanda, Masato
Oshima, Motohiko
Iwama, Atsushi
Matsumiya, Goro
Kobayashi, Yoshio
author_sort Iwahana, Togo
collection PubMed
description BACKGROUND: Left ventricular reverse remodeling (LVRR) has been detected in non-ischemic dilated cardiomyopathy (NIDCM) patients following optimal treatment. However, its prediction with only conventional modalities is often difficult. This study sought to examine whether RNA sequencing (RNA-seq) of myocardium tissue samples could predict LVRR in NIDCM. METHODS: A total of 17 advanced NIDCM patients with left ventricular ejection fraction (LVEF) below 30% who underwent cardiac biopsy from Left ventricle (LV) were prospectively recruited. They received optimal treatment and followed with echocardiogram every 6 months. Based on LVRR status after 12 months of treatment, patients were divided into the reverse remodeling (RR) or non-RR group. Tissue samples were analyzed by RNA-seq, and a functional analysis of differentially expressed genes was carried out. RESULTS: There were eight and nine patients in the RR and non-RR groups, respectively. No difference was found in age, sex, disease duration, LV end-diastolic diameter, and LVEF between the two groups. There were 155 genes that were differentially expressed between the two groups. Nicotinamide adenine dinucleotide ubiquinone oxidoreductase subunit (NDUF)S5 and Growth arrest and DNA-damage-inducible protein (GADD)45G, along with several genes related to the mitochondrial respiratory chain and ribosome, were significantly downregulated in the RR as compared to the non-RR group. CONCLUSION: GADD45G and NDUFS5 are potential biomarkers for LVRR in patients with advanced NIDCM.
format Online
Article
Text
id pubmed-7059273
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-70592732020-03-12 Novel myocardial markers GADD45G and NDUFS5 identified by RNA-sequencing predicts left ventricular reverse remodeling in advanced non-ischemic heart failure: a retrospective cohort study Iwahana, Togo Okada, Sho Kanda, Masato Oshima, Motohiko Iwama, Atsushi Matsumiya, Goro Kobayashi, Yoshio BMC Cardiovasc Disord Research Article BACKGROUND: Left ventricular reverse remodeling (LVRR) has been detected in non-ischemic dilated cardiomyopathy (NIDCM) patients following optimal treatment. However, its prediction with only conventional modalities is often difficult. This study sought to examine whether RNA sequencing (RNA-seq) of myocardium tissue samples could predict LVRR in NIDCM. METHODS: A total of 17 advanced NIDCM patients with left ventricular ejection fraction (LVEF) below 30% who underwent cardiac biopsy from Left ventricle (LV) were prospectively recruited. They received optimal treatment and followed with echocardiogram every 6 months. Based on LVRR status after 12 months of treatment, patients were divided into the reverse remodeling (RR) or non-RR group. Tissue samples were analyzed by RNA-seq, and a functional analysis of differentially expressed genes was carried out. RESULTS: There were eight and nine patients in the RR and non-RR groups, respectively. No difference was found in age, sex, disease duration, LV end-diastolic diameter, and LVEF between the two groups. There were 155 genes that were differentially expressed between the two groups. Nicotinamide adenine dinucleotide ubiquinone oxidoreductase subunit (NDUF)S5 and Growth arrest and DNA-damage-inducible protein (GADD)45G, along with several genes related to the mitochondrial respiratory chain and ribosome, were significantly downregulated in the RR as compared to the non-RR group. CONCLUSION: GADD45G and NDUFS5 are potential biomarkers for LVRR in patients with advanced NIDCM. BioMed Central 2020-03-05 /pmc/articles/PMC7059273/ /pubmed/32138671 http://dx.doi.org/10.1186/s12872-020-01396-2 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
Iwahana, Togo
Okada, Sho
Kanda, Masato
Oshima, Motohiko
Iwama, Atsushi
Matsumiya, Goro
Kobayashi, Yoshio
Novel myocardial markers GADD45G and NDUFS5 identified by RNA-sequencing predicts left ventricular reverse remodeling in advanced non-ischemic heart failure: a retrospective cohort study
title Novel myocardial markers GADD45G and NDUFS5 identified by RNA-sequencing predicts left ventricular reverse remodeling in advanced non-ischemic heart failure: a retrospective cohort study
title_full Novel myocardial markers GADD45G and NDUFS5 identified by RNA-sequencing predicts left ventricular reverse remodeling in advanced non-ischemic heart failure: a retrospective cohort study
title_fullStr Novel myocardial markers GADD45G and NDUFS5 identified by RNA-sequencing predicts left ventricular reverse remodeling in advanced non-ischemic heart failure: a retrospective cohort study
title_full_unstemmed Novel myocardial markers GADD45G and NDUFS5 identified by RNA-sequencing predicts left ventricular reverse remodeling in advanced non-ischemic heart failure: a retrospective cohort study
title_short Novel myocardial markers GADD45G and NDUFS5 identified by RNA-sequencing predicts left ventricular reverse remodeling in advanced non-ischemic heart failure: a retrospective cohort study
title_sort novel myocardial markers gadd45g and ndufs5 identified by rna-sequencing predicts left ventricular reverse remodeling in advanced non-ischemic heart failure: a retrospective cohort study
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7059273/
https://www.ncbi.nlm.nih.gov/pubmed/32138671
http://dx.doi.org/10.1186/s12872-020-01396-2
work_keys_str_mv AT iwahanatogo novelmyocardialmarkersgadd45gandndufs5identifiedbyrnasequencingpredictsleftventricularreverseremodelinginadvancednonischemicheartfailurearetrospectivecohortstudy
AT okadasho novelmyocardialmarkersgadd45gandndufs5identifiedbyrnasequencingpredictsleftventricularreverseremodelinginadvancednonischemicheartfailurearetrospectivecohortstudy
AT kandamasato novelmyocardialmarkersgadd45gandndufs5identifiedbyrnasequencingpredictsleftventricularreverseremodelinginadvancednonischemicheartfailurearetrospectivecohortstudy
AT oshimamotohiko novelmyocardialmarkersgadd45gandndufs5identifiedbyrnasequencingpredictsleftventricularreverseremodelinginadvancednonischemicheartfailurearetrospectivecohortstudy
AT iwamaatsushi novelmyocardialmarkersgadd45gandndufs5identifiedbyrnasequencingpredictsleftventricularreverseremodelinginadvancednonischemicheartfailurearetrospectivecohortstudy
AT matsumiyagoro novelmyocardialmarkersgadd45gandndufs5identifiedbyrnasequencingpredictsleftventricularreverseremodelinginadvancednonischemicheartfailurearetrospectivecohortstudy
AT kobayashiyoshio novelmyocardialmarkersgadd45gandndufs5identifiedbyrnasequencingpredictsleftventricularreverseremodelinginadvancednonischemicheartfailurearetrospectivecohortstudy