Cargando…
Overcoming the difficulties of predicting conformational polymorph energetics in molecular crystals via correlated wavefunction methods
Molecular crystal structure prediction is increasingly being applied to study the solid form landscapes of larger, more flexible pharmaceutical molecules. Despite many successes in crystal structure prediction, van der Waals-inclusive density functional theory (DFT) methods exhibit serious failures...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Royal Society of Chemistry
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7059316/ https://www.ncbi.nlm.nih.gov/pubmed/32190277 http://dx.doi.org/10.1039/c9sc05689k |
_version_ | 1783504025030754304 |
---|---|
author | Greenwell, Chandler McKinley, Jessica L. Zhang, Peiyu Zeng, Qun Sun, Guangxu Li, Bochen Wen, Shuhao Beran, Gregory J. O. |
author_facet | Greenwell, Chandler McKinley, Jessica L. Zhang, Peiyu Zeng, Qun Sun, Guangxu Li, Bochen Wen, Shuhao Beran, Gregory J. O. |
author_sort | Greenwell, Chandler |
collection | PubMed |
description | Molecular crystal structure prediction is increasingly being applied to study the solid form landscapes of larger, more flexible pharmaceutical molecules. Despite many successes in crystal structure prediction, van der Waals-inclusive density functional theory (DFT) methods exhibit serious failures predicting the polymorph stabilities for a number of systems exhibiting conformational polymorphism, where changes in intramolecular conformation lead to different intermolecular crystal packings. Here, the stabilities of the conformational polymorphs of o-acetamidobenzamide, ROY, and oxalyl dihydrazide are examined in detail. DFT functionals that have previously been very successful in crystal structure prediction perform poorly in all three systems, due primarily to the poor intramolecular conformational energies, but also due to the intermolecular description in oxalyl dihydrazide. In all three cases, a fragment-based dispersion-corrected second-order Møller–Plesset perturbation theory (MP2D) treatment of the crystals overcomes these difficulties and predicts conformational polymorph stabilities in good agreement with experiment. These results highlight the need for methods which go beyond current-generation DFT functionals to make crystal polymorph stability predictions truly reliable. |
format | Online Article Text |
id | pubmed-7059316 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-70593162020-03-18 Overcoming the difficulties of predicting conformational polymorph energetics in molecular crystals via correlated wavefunction methods Greenwell, Chandler McKinley, Jessica L. Zhang, Peiyu Zeng, Qun Sun, Guangxu Li, Bochen Wen, Shuhao Beran, Gregory J. O. Chem Sci Chemistry Molecular crystal structure prediction is increasingly being applied to study the solid form landscapes of larger, more flexible pharmaceutical molecules. Despite many successes in crystal structure prediction, van der Waals-inclusive density functional theory (DFT) methods exhibit serious failures predicting the polymorph stabilities for a number of systems exhibiting conformational polymorphism, where changes in intramolecular conformation lead to different intermolecular crystal packings. Here, the stabilities of the conformational polymorphs of o-acetamidobenzamide, ROY, and oxalyl dihydrazide are examined in detail. DFT functionals that have previously been very successful in crystal structure prediction perform poorly in all three systems, due primarily to the poor intramolecular conformational energies, but also due to the intermolecular description in oxalyl dihydrazide. In all three cases, a fragment-based dispersion-corrected second-order Møller–Plesset perturbation theory (MP2D) treatment of the crystals overcomes these difficulties and predicts conformational polymorph stabilities in good agreement with experiment. These results highlight the need for methods which go beyond current-generation DFT functionals to make crystal polymorph stability predictions truly reliable. Royal Society of Chemistry 2020-01-14 /pmc/articles/PMC7059316/ /pubmed/32190277 http://dx.doi.org/10.1039/c9sc05689k Text en This journal is © The Royal Society of Chemistry 2020 http://creativecommons.org/licenses/by/3.0/ This article is freely available. This article is licensed under a Creative Commons Attribution 3.0 Unported Licence (CC BY 3.0) |
spellingShingle | Chemistry Greenwell, Chandler McKinley, Jessica L. Zhang, Peiyu Zeng, Qun Sun, Guangxu Li, Bochen Wen, Shuhao Beran, Gregory J. O. Overcoming the difficulties of predicting conformational polymorph energetics in molecular crystals via correlated wavefunction methods |
title | Overcoming the difficulties of predicting conformational polymorph energetics in molecular crystals via correlated wavefunction methods
|
title_full | Overcoming the difficulties of predicting conformational polymorph energetics in molecular crystals via correlated wavefunction methods
|
title_fullStr | Overcoming the difficulties of predicting conformational polymorph energetics in molecular crystals via correlated wavefunction methods
|
title_full_unstemmed | Overcoming the difficulties of predicting conformational polymorph energetics in molecular crystals via correlated wavefunction methods
|
title_short | Overcoming the difficulties of predicting conformational polymorph energetics in molecular crystals via correlated wavefunction methods
|
title_sort | overcoming the difficulties of predicting conformational polymorph energetics in molecular crystals via correlated wavefunction methods |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7059316/ https://www.ncbi.nlm.nih.gov/pubmed/32190277 http://dx.doi.org/10.1039/c9sc05689k |
work_keys_str_mv | AT greenwellchandler overcomingthedifficultiesofpredictingconformationalpolymorphenergeticsinmolecularcrystalsviacorrelatedwavefunctionmethods AT mckinleyjessical overcomingthedifficultiesofpredictingconformationalpolymorphenergeticsinmolecularcrystalsviacorrelatedwavefunctionmethods AT zhangpeiyu overcomingthedifficultiesofpredictingconformationalpolymorphenergeticsinmolecularcrystalsviacorrelatedwavefunctionmethods AT zengqun overcomingthedifficultiesofpredictingconformationalpolymorphenergeticsinmolecularcrystalsviacorrelatedwavefunctionmethods AT sunguangxu overcomingthedifficultiesofpredictingconformationalpolymorphenergeticsinmolecularcrystalsviacorrelatedwavefunctionmethods AT libochen overcomingthedifficultiesofpredictingconformationalpolymorphenergeticsinmolecularcrystalsviacorrelatedwavefunctionmethods AT wenshuhao overcomingthedifficultiesofpredictingconformationalpolymorphenergeticsinmolecularcrystalsviacorrelatedwavefunctionmethods AT berangregoryjo overcomingthedifficultiesofpredictingconformationalpolymorphenergeticsinmolecularcrystalsviacorrelatedwavefunctionmethods |