Cargando…

LDlinkR: An R Package for Rapidly Calculating Linkage Disequilibrium Statistics in Diverse Populations

Genomic research involving human genetics and evolutionary biology relies heavily on linkage disequilibrium (LD) to investigate population-specific genetic structure, functionally map regions of disease susceptibility and uncover evolutionary history. Interactive and powerful tools are needed to cal...

Descripción completa

Detalles Bibliográficos
Autores principales:	Myers, Timothy A., Chanock, Stephen J., Machiela, Mitchell J.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2020
Materias:	Genetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7059597/ https://www.ncbi.nlm.nih.gov/pubmed/32180801 http://dx.doi.org/10.3389/fgene.2020.00157

Ejemplares similares

GWLD: an R package for genome-wide linkage disequilibrium analysis
por: Zhang, Rong, et al.
Publicado: (2023)

IntAssoPlot: An R Package for Integrated Visualization of Genome-Wide Association Study Results With Gene Structure and Linkage Disequilibrium Matrix
por: He, Fengyu, et al.
Publicado: (2020)

On the Extent of Linkage Disequilibrium in the Genome of Farm Animals
por: Qanbari, Saber
Publicado: (2020)

sparrpowR: a flexible R package to estimate statistical power to identify spatial clustering of two groups and its application
por: Buller, Ian D., et al.
Publicado: (2021)

Linkage disequilibrium in Angus, Charolais, and Crossbred beef cattle
por: Lu, Duc, et al.
Publicado: (2012)

Estimation of Recombination Rate and Maternal Linkage Disequilibrium in Half-Sibs
por: Hampel, Alexander, et al.
Publicado: (2018)

LDexpress: an online tool for integrating population-specific linkage disequilibrium patterns with tissue-specific expression data
por: Lin, Shu-Hong, et al.
Publicado: (2021)

The Decay of Disease Association with Declining Linkage Disequilibrium: A Fine Mapping Theorem
por: Maadooliat, Mehdi, et al.
Publicado: (2016)

Model and Algorithm for Linkage Disequilibrium Analysis in a Non-Equilibrium Population
por: Liu, Jingyuan, et al.
Publicado: (2012)

Evaluation of genetic risk score models in the presence of interaction and linkage disequilibrium
por: Che, Ronglin, et al.
Publicado: (2013)

Linkage disequilibrium measures for fine-scale mapping of disease loci are revisited
por: Zapata, Carlos
Publicado: (2013)

A Comparison of Methods for Gene-Based Testing That Account for Linkage Disequilibrium
por: Cinar, Ozan, et al.
Publicado: (2022)

Editorial: Population genomic architecture: Conserved polymorphic sequences (CPSs), not linkage disequilibrium
por: Alper, Chester A., et al.
Publicado: (2023)

Linkage disequilibrium and diversity for three genomic regions in Azoreans and mainland Portuguese
por: Branco, Claudia C., et al.
Publicado: (2009)

Exact Distribution of Linkage Disequilibrium in the Presence of Mutation, Selection, or Minor Allele Frequency Filtering
por: Qu, Jiayi, et al.
Publicado: (2020)

Bias of allele-sharing linkage statistics in the presence of intermarker linkage disequilibrium
por: Goode, Ellen L, et al.
Publicado: (2005)

Linkage disequilibrium and past effective population size in native Tunisian cattle
por: Jemaa, Slim Ben, et al.
Publicado: (2019)

Extent of Linkage Disequilibrium and Effective Population Size in Four South African Sanga Cattle Breeds
por: Makina, Sithembile O., et al.
Publicado: (2015)

Corrigendum: Exact Distribution of Linkage Disequilibrium in the Presence of Mutation, Selection, or Minor Allele Frequency Filtering
por: Qu, Jiayi, et al.
Publicado: (2020)

Genome-Wide Patterns of Population Structure and Linkage Disequilibrium in Farmed Nile Tilapia (Oreochromis niloticus)
por: Yoshida, Grazyella M., et al.
Publicado: (2019)

Genomic Prediction Accuracy Using Haplotypes Defined by Size and Hierarchical Clustering Based on Linkage Disequilibrium
por: Won, Sohyoung, et al.
Publicado: (2020)

Search for inherited susceptibility to radiation-associated meningioma by genomewide SNP linkage disequilibrium mapping
por: Hosking, F J, et al.
Publicado: (2011)

A Method to Assess Linkage Disequilibrium between CNVs and SNPs Inside Copy Number Variable Regions
por: Wineinger, Nathan E., et al.
Publicado: (2011)

Corrigendum: Genomic Prediction Accuracy Using Haplotypes Defined by Size and Hierarchical Clustering Based on Linkage Disequilibrium
por: Won, Sohyoung, et al.
Publicado: (2021)

Linkage Disequilibrium, Effective Population Size and Genomic Inbreeding Rates in American Mink Using Genotyping-by-Sequencing Data
por: Karimi, Karim, et al.
Publicado: (2020)

A Novel Method for Mendelian Randomization Analyses With Pleiotropy and Linkage Disequilibrium in Genetic Variants From Individual Data
por: Wang, Yuquan, et al.
Publicado: (2021)

Confounding by linkage disequilibrium
por: Aissani, Brahim
Publicado: (2014)

MRPC: An R Package for Inference of Causal Graphs
por: Badsha, Md. Bahadur, et al.
Publicado: (2021)

Linkage Disequilibrium in Wild Mice
por: Laurie, Cathy C, et al.
Publicado: (2007)

Visualizing SNP statistics in the context of linkage disequilibrium using LD-Plus
por: Bush, William S., et al.
Publicado: (2010)

Population genetic structure, linkage disequilibrium and effective population size of conserved and extensively raised village chicken populations of Southern Africa
por: Khanyile, Khulekani S., et al.
Publicado: (2015)

Mapping Recombination Rate on the Autosomal Chromosomes Based on the Persistency of Linkage Disequilibrium Phase Among Autochthonous Beef Cattle Populations in Spain
por: Mouresan, Elena Flavia, et al.
Publicado: (2019)

Linkage disequilibrium of single-nucleotide polymorphism data: how sampling methods affect estimates of linkage disequilibrium
por: He, Qimei, et al.
Publicado: (2009)

Rcirc: An R Package for circRNA Analyses and Visualization
por: Sun, Peisen, et al.
Publicado: (2020)

Crosslink: An R Package for Network Visualization of Grouped Nodes
por: Liu, Di, et al.
Publicado: (2021)

lme4GS: An R-Package for Genomic Selection
por: Caamal-Pat, Diana, et al.
Publicado: (2021)

TrainSel: An R Package for Selection of Training Populations
por: Akdemir, Deniz, et al.
Publicado: (2021)

smplot: An R Package for Easy and Elegant Data Visualization
por: Min, Seung Hyun, et al.
Publicado: (2021)

Volume measures for linkage disequilibrium
por: Chen, Yuguo, et al.
Publicado: (2006)

Bayesian estimates of linkage disequilibrium
por: Sebastiani, Paola, et al.
Publicado: (2007)

Cannot write session to /tmp/vufind_sessions/sess_u9m95vv8ef3q3fmvct9h02mo0b