Cargando…

Nucleic acid detection aboard the International Space Station by colorimetric loop‐mediated isothermal amplification (LAMP)

Human spaceflight endeavors present an opportunity to expand our presence beyond Earth. To this end, it is crucial to understand and diagnose effects of long‐term space travel on the human body. Developing tools for targeted, on‐site detection of specific DNA sequences will allow us to establish res...

Descripción completa

Detalles Bibliográficos
Autores principales: Rubinfien, Julian, Atabay, Kutay D., Nichols, Nicole M., Tanner, Nathan A., Pezza, John A., Gray, Michelle M., Wagner, Brandon M., Poppin, Jayme N., Aken, Jordan T., Gleason, Emily J., Foley, Kevin D., Copeland, David Scott, Kraves, Sebastian, Alvarez Saavedra, Ezequiel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7059625/
https://www.ncbi.nlm.nih.gov/pubmed/32161905
http://dx.doi.org/10.1096/fba.2019-00088
_version_ 1783504086757277696
author Rubinfien, Julian
Atabay, Kutay D.
Nichols, Nicole M.
Tanner, Nathan A.
Pezza, John A.
Gray, Michelle M.
Wagner, Brandon M.
Poppin, Jayme N.
Aken, Jordan T.
Gleason, Emily J.
Foley, Kevin D.
Copeland, David Scott
Kraves, Sebastian
Alvarez Saavedra, Ezequiel
author_facet Rubinfien, Julian
Atabay, Kutay D.
Nichols, Nicole M.
Tanner, Nathan A.
Pezza, John A.
Gray, Michelle M.
Wagner, Brandon M.
Poppin, Jayme N.
Aken, Jordan T.
Gleason, Emily J.
Foley, Kevin D.
Copeland, David Scott
Kraves, Sebastian
Alvarez Saavedra, Ezequiel
author_sort Rubinfien, Julian
collection PubMed
description Human spaceflight endeavors present an opportunity to expand our presence beyond Earth. To this end, it is crucial to understand and diagnose effects of long‐term space travel on the human body. Developing tools for targeted, on‐site detection of specific DNA sequences will allow us to establish research and diagnostics platforms that will benefit space programs. We describe a simple DNA diagnostic method that utilizes colorimetric loop‐mediated isothermal amplification (LAMP) to enable detection of a repetitive telomeric DNA sequence in as little as 30 minutes. A proof of concept assay for this method was carried out using existing hardware on the International Space Station and the results were read instantly by an astronaut through a simple color change of the reaction mixture. LAMP offers a novel platform for on‐orbit DNA‐based diagnostics that can be deployed on the International Space Station and to the broader benefit of space programs.
format Online
Article
Text
id pubmed-7059625
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-70596252020-03-11 Nucleic acid detection aboard the International Space Station by colorimetric loop‐mediated isothermal amplification (LAMP) Rubinfien, Julian Atabay, Kutay D. Nichols, Nicole M. Tanner, Nathan A. Pezza, John A. Gray, Michelle M. Wagner, Brandon M. Poppin, Jayme N. Aken, Jordan T. Gleason, Emily J. Foley, Kevin D. Copeland, David Scott Kraves, Sebastian Alvarez Saavedra, Ezequiel FASEB Bioadv Research Articles Human spaceflight endeavors present an opportunity to expand our presence beyond Earth. To this end, it is crucial to understand and diagnose effects of long‐term space travel on the human body. Developing tools for targeted, on‐site detection of specific DNA sequences will allow us to establish research and diagnostics platforms that will benefit space programs. We describe a simple DNA diagnostic method that utilizes colorimetric loop‐mediated isothermal amplification (LAMP) to enable detection of a repetitive telomeric DNA sequence in as little as 30 minutes. A proof of concept assay for this method was carried out using existing hardware on the International Space Station and the results were read instantly by an astronaut through a simple color change of the reaction mixture. LAMP offers a novel platform for on‐orbit DNA‐based diagnostics that can be deployed on the International Space Station and to the broader benefit of space programs. John Wiley and Sons Inc. 2020-01-16 /pmc/articles/PMC7059625/ /pubmed/32161905 http://dx.doi.org/10.1096/fba.2019-00088 Text en © 2019 The Authors. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Rubinfien, Julian
Atabay, Kutay D.
Nichols, Nicole M.
Tanner, Nathan A.
Pezza, John A.
Gray, Michelle M.
Wagner, Brandon M.
Poppin, Jayme N.
Aken, Jordan T.
Gleason, Emily J.
Foley, Kevin D.
Copeland, David Scott
Kraves, Sebastian
Alvarez Saavedra, Ezequiel
Nucleic acid detection aboard the International Space Station by colorimetric loop‐mediated isothermal amplification (LAMP)
title Nucleic acid detection aboard the International Space Station by colorimetric loop‐mediated isothermal amplification (LAMP)
title_full Nucleic acid detection aboard the International Space Station by colorimetric loop‐mediated isothermal amplification (LAMP)
title_fullStr Nucleic acid detection aboard the International Space Station by colorimetric loop‐mediated isothermal amplification (LAMP)
title_full_unstemmed Nucleic acid detection aboard the International Space Station by colorimetric loop‐mediated isothermal amplification (LAMP)
title_short Nucleic acid detection aboard the International Space Station by colorimetric loop‐mediated isothermal amplification (LAMP)
title_sort nucleic acid detection aboard the international space station by colorimetric loop‐mediated isothermal amplification (lamp)
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7059625/
https://www.ncbi.nlm.nih.gov/pubmed/32161905
http://dx.doi.org/10.1096/fba.2019-00088
work_keys_str_mv AT rubinfienjulian nucleicaciddetectionaboardtheinternationalspacestationbycolorimetricloopmediatedisothermalamplificationlamp
AT atabaykutayd nucleicaciddetectionaboardtheinternationalspacestationbycolorimetricloopmediatedisothermalamplificationlamp
AT nicholsnicolem nucleicaciddetectionaboardtheinternationalspacestationbycolorimetricloopmediatedisothermalamplificationlamp
AT tannernathana nucleicaciddetectionaboardtheinternationalspacestationbycolorimetricloopmediatedisothermalamplificationlamp
AT pezzajohna nucleicaciddetectionaboardtheinternationalspacestationbycolorimetricloopmediatedisothermalamplificationlamp
AT graymichellem nucleicaciddetectionaboardtheinternationalspacestationbycolorimetricloopmediatedisothermalamplificationlamp
AT wagnerbrandonm nucleicaciddetectionaboardtheinternationalspacestationbycolorimetricloopmediatedisothermalamplificationlamp
AT poppinjaymen nucleicaciddetectionaboardtheinternationalspacestationbycolorimetricloopmediatedisothermalamplificationlamp
AT akenjordant nucleicaciddetectionaboardtheinternationalspacestationbycolorimetricloopmediatedisothermalamplificationlamp
AT gleasonemilyj nucleicaciddetectionaboardtheinternationalspacestationbycolorimetricloopmediatedisothermalamplificationlamp
AT foleykevind nucleicaciddetectionaboardtheinternationalspacestationbycolorimetricloopmediatedisothermalamplificationlamp
AT copelanddavidscott nucleicaciddetectionaboardtheinternationalspacestationbycolorimetricloopmediatedisothermalamplificationlamp
AT kravessebastian nucleicaciddetectionaboardtheinternationalspacestationbycolorimetricloopmediatedisothermalamplificationlamp
AT alvarezsaavedraezequiel nucleicaciddetectionaboardtheinternationalspacestationbycolorimetricloopmediatedisothermalamplificationlamp