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Pituitary-Derived Circular RNAs Expression and Regulatory Network Prediction During the Onset of Puberty in Landrace × Yorkshire Crossbred Pigs
Being the center of the hypothalamus-pituitary-ovary (HPO) axis, the pituitary plays a key role in the onset of puberty. Recent studies show that circular RNAs (circRNAs) can perform as miRNA sponges to regulate development in animals. However, the function of pituitary-derived circRNAs in first est...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7059797/ https://www.ncbi.nlm.nih.gov/pubmed/32180798 http://dx.doi.org/10.3389/fgene.2020.00135 |
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author | Chen, Zitao Pan, Xiangchun Kong, Yaru Jiang, Yao Zhong, Yuyi Zhang, Hao Zhang, Zhe Yuan, Xiaolong Li, Jiaqi |
author_facet | Chen, Zitao Pan, Xiangchun Kong, Yaru Jiang, Yao Zhong, Yuyi Zhang, Hao Zhang, Zhe Yuan, Xiaolong Li, Jiaqi |
author_sort | Chen, Zitao |
collection | PubMed |
description | Being the center of the hypothalamus-pituitary-ovary (HPO) axis, the pituitary plays a key role in the onset of puberty. Recent studies show that circular RNAs (circRNAs) can perform as miRNA sponges to regulate development in animals. However, the function of pituitary-derived circRNAs in first estrus remains unclear in pigs. In this study, we performed a genome-wide identification and characterization of circRNAs using pituitaries from Landrace × Yorkshire crossbred pigs at three stages: pre-, in-, and post-puberty, to describe such pituitary-derived circRNAs in pigs. A total of 5148 circRNAs were found in the gilts' pituitaries, averaging 18 682 bp in genomic distance, which consisted of approximately 91% exonic, 6% intergenic, and 3% intronic circRNAs. Furthermore, 158 novel circRNAs were identified for the first time and classified as putative pituitary-specific circRNAs. Their expression levels during the onset of puberty, significantly exceeded those of the other circRNAs, and the parental genes of these putative pituitary-specific circRNAs were enriched in “ssc04917: prolactin signaling pathway,” “ssc04080: neuroactive ligand-receptor interaction,” and “ssc04728: dopaminergic synapse” pathways, all of which were consistent with pituitary functioning. Additionally, 17 differentially regulated circRNAs were found and investigated for their potential interaction with miRNAs, along with genes, by constructing a circRNA-targeted miRNA-gene network. Taken together, these results provide new insight into the circRNA-mediated timing of puberty in gilts at the pituitary level. |
format | Online Article Text |
id | pubmed-7059797 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-70597972020-03-16 Pituitary-Derived Circular RNAs Expression and Regulatory Network Prediction During the Onset of Puberty in Landrace × Yorkshire Crossbred Pigs Chen, Zitao Pan, Xiangchun Kong, Yaru Jiang, Yao Zhong, Yuyi Zhang, Hao Zhang, Zhe Yuan, Xiaolong Li, Jiaqi Front Genet Genetics Being the center of the hypothalamus-pituitary-ovary (HPO) axis, the pituitary plays a key role in the onset of puberty. Recent studies show that circular RNAs (circRNAs) can perform as miRNA sponges to regulate development in animals. However, the function of pituitary-derived circRNAs in first estrus remains unclear in pigs. In this study, we performed a genome-wide identification and characterization of circRNAs using pituitaries from Landrace × Yorkshire crossbred pigs at three stages: pre-, in-, and post-puberty, to describe such pituitary-derived circRNAs in pigs. A total of 5148 circRNAs were found in the gilts' pituitaries, averaging 18 682 bp in genomic distance, which consisted of approximately 91% exonic, 6% intergenic, and 3% intronic circRNAs. Furthermore, 158 novel circRNAs were identified for the first time and classified as putative pituitary-specific circRNAs. Their expression levels during the onset of puberty, significantly exceeded those of the other circRNAs, and the parental genes of these putative pituitary-specific circRNAs were enriched in “ssc04917: prolactin signaling pathway,” “ssc04080: neuroactive ligand-receptor interaction,” and “ssc04728: dopaminergic synapse” pathways, all of which were consistent with pituitary functioning. Additionally, 17 differentially regulated circRNAs were found and investigated for their potential interaction with miRNAs, along with genes, by constructing a circRNA-targeted miRNA-gene network. Taken together, these results provide new insight into the circRNA-mediated timing of puberty in gilts at the pituitary level. Frontiers Media S.A. 2020-02-28 /pmc/articles/PMC7059797/ /pubmed/32180798 http://dx.doi.org/10.3389/fgene.2020.00135 Text en Copyright © 2020 Chen, Pan, Kong, Jiang, Zhong, Zhang, Zhang, Yuan and Li http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Chen, Zitao Pan, Xiangchun Kong, Yaru Jiang, Yao Zhong, Yuyi Zhang, Hao Zhang, Zhe Yuan, Xiaolong Li, Jiaqi Pituitary-Derived Circular RNAs Expression and Regulatory Network Prediction During the Onset of Puberty in Landrace × Yorkshire Crossbred Pigs |
title | Pituitary-Derived Circular RNAs Expression and Regulatory Network Prediction During the Onset of Puberty in Landrace × Yorkshire Crossbred Pigs |
title_full | Pituitary-Derived Circular RNAs Expression and Regulatory Network Prediction During the Onset of Puberty in Landrace × Yorkshire Crossbred Pigs |
title_fullStr | Pituitary-Derived Circular RNAs Expression and Regulatory Network Prediction During the Onset of Puberty in Landrace × Yorkshire Crossbred Pigs |
title_full_unstemmed | Pituitary-Derived Circular RNAs Expression and Regulatory Network Prediction During the Onset of Puberty in Landrace × Yorkshire Crossbred Pigs |
title_short | Pituitary-Derived Circular RNAs Expression and Regulatory Network Prediction During the Onset of Puberty in Landrace × Yorkshire Crossbred Pigs |
title_sort | pituitary-derived circular rnas expression and regulatory network prediction during the onset of puberty in landrace × yorkshire crossbred pigs |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7059797/ https://www.ncbi.nlm.nih.gov/pubmed/32180798 http://dx.doi.org/10.3389/fgene.2020.00135 |
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