Cargando…

Comparative analysis of HER2 copy number between plasma and tissue samples in gastric cancer using droplet digital PCR

In this study, we measured the human epidermal growth factor receptor 2 (HER2) copy number in both tissue and plasma samples of gastric cancer patients by using droplet digital polymerase chain reaction (ddPCR) method. Eighty gastric cancer patients were enrolled and both formalin-fixed and paraffin...

Descripción completa

Detalles Bibliográficos
Autores principales: Kim, Boram, Nam, Soo Kyung, Seo, Soo Hyun, Park, Kyoung Un, Ahn, Sang-Hoon, Park, Do Joong, Kim, Hyung-Ho, Kim, Woo Ho, Lee, Hye Seung
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7060190/
https://www.ncbi.nlm.nih.gov/pubmed/32144300
http://dx.doi.org/10.1038/s41598-020-60897-4
_version_ 1783504179145211904
author Kim, Boram
Nam, Soo Kyung
Seo, Soo Hyun
Park, Kyoung Un
Ahn, Sang-Hoon
Park, Do Joong
Kim, Hyung-Ho
Kim, Woo Ho
Lee, Hye Seung
author_facet Kim, Boram
Nam, Soo Kyung
Seo, Soo Hyun
Park, Kyoung Un
Ahn, Sang-Hoon
Park, Do Joong
Kim, Hyung-Ho
Kim, Woo Ho
Lee, Hye Seung
author_sort Kim, Boram
collection PubMed
description In this study, we measured the human epidermal growth factor receptor 2 (HER2) copy number in both tissue and plasma samples of gastric cancer patients by using droplet digital polymerase chain reaction (ddPCR) method. Eighty gastric cancer patients were enrolled and both formalin-fixed and paraffin-embedded tissue and preoperative plasma samples were collected. HER2 status was determined by HER2 immunohistochemistry (IHC)/silver in situ hybridization (SISH) in tissue samples and ddPCR of the target gene HER2 and the reference gene eukaryotic translation initiation factor 2C, 1 in both tissue and plasma. The concordance rate of tissue HER2 status determined by IHC/SISH and HER2 ddPCR was 90.0% (72/80), and the sensitivity and specificity of tissue ddPCR were 85.0% and 95.0%, respectively. The concordance rate of plasma ddPCR and IHC/SISH was 63.8% (51/80). The sensitivity, specificity, positive predictive value, and negative predictive value of plasma HER2 ddPCR were 37.5%, 90.0%, 79.0%, and 59.0%, respectively. As HER2 measurement by tissue ddPCR showed a high concordance rate with HER2 status by IHC/SISH, it could replace tissue IHC/SISH testing in gastric cancer. These findings may contribute to the development of tissue and plasma HER2 testing that would be useful in daily practice.
format Online
Article
Text
id pubmed-7060190
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-70601902020-03-18 Comparative analysis of HER2 copy number between plasma and tissue samples in gastric cancer using droplet digital PCR Kim, Boram Nam, Soo Kyung Seo, Soo Hyun Park, Kyoung Un Ahn, Sang-Hoon Park, Do Joong Kim, Hyung-Ho Kim, Woo Ho Lee, Hye Seung Sci Rep Article In this study, we measured the human epidermal growth factor receptor 2 (HER2) copy number in both tissue and plasma samples of gastric cancer patients by using droplet digital polymerase chain reaction (ddPCR) method. Eighty gastric cancer patients were enrolled and both formalin-fixed and paraffin-embedded tissue and preoperative plasma samples were collected. HER2 status was determined by HER2 immunohistochemistry (IHC)/silver in situ hybridization (SISH) in tissue samples and ddPCR of the target gene HER2 and the reference gene eukaryotic translation initiation factor 2C, 1 in both tissue and plasma. The concordance rate of tissue HER2 status determined by IHC/SISH and HER2 ddPCR was 90.0% (72/80), and the sensitivity and specificity of tissue ddPCR were 85.0% and 95.0%, respectively. The concordance rate of plasma ddPCR and IHC/SISH was 63.8% (51/80). The sensitivity, specificity, positive predictive value, and negative predictive value of plasma HER2 ddPCR were 37.5%, 90.0%, 79.0%, and 59.0%, respectively. As HER2 measurement by tissue ddPCR showed a high concordance rate with HER2 status by IHC/SISH, it could replace tissue IHC/SISH testing in gastric cancer. These findings may contribute to the development of tissue and plasma HER2 testing that would be useful in daily practice. Nature Publishing Group UK 2020-03-06 /pmc/articles/PMC7060190/ /pubmed/32144300 http://dx.doi.org/10.1038/s41598-020-60897-4 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Kim, Boram
Nam, Soo Kyung
Seo, Soo Hyun
Park, Kyoung Un
Ahn, Sang-Hoon
Park, Do Joong
Kim, Hyung-Ho
Kim, Woo Ho
Lee, Hye Seung
Comparative analysis of HER2 copy number between plasma and tissue samples in gastric cancer using droplet digital PCR
title Comparative analysis of HER2 copy number between plasma and tissue samples in gastric cancer using droplet digital PCR
title_full Comparative analysis of HER2 copy number between plasma and tissue samples in gastric cancer using droplet digital PCR
title_fullStr Comparative analysis of HER2 copy number between plasma and tissue samples in gastric cancer using droplet digital PCR
title_full_unstemmed Comparative analysis of HER2 copy number between plasma and tissue samples in gastric cancer using droplet digital PCR
title_short Comparative analysis of HER2 copy number between plasma and tissue samples in gastric cancer using droplet digital PCR
title_sort comparative analysis of her2 copy number between plasma and tissue samples in gastric cancer using droplet digital pcr
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7060190/
https://www.ncbi.nlm.nih.gov/pubmed/32144300
http://dx.doi.org/10.1038/s41598-020-60897-4
work_keys_str_mv AT kimboram comparativeanalysisofher2copynumberbetweenplasmaandtissuesamplesingastriccancerusingdropletdigitalpcr
AT namsookyung comparativeanalysisofher2copynumberbetweenplasmaandtissuesamplesingastriccancerusingdropletdigitalpcr
AT seosoohyun comparativeanalysisofher2copynumberbetweenplasmaandtissuesamplesingastriccancerusingdropletdigitalpcr
AT parkkyoungun comparativeanalysisofher2copynumberbetweenplasmaandtissuesamplesingastriccancerusingdropletdigitalpcr
AT ahnsanghoon comparativeanalysisofher2copynumberbetweenplasmaandtissuesamplesingastriccancerusingdropletdigitalpcr
AT parkdojoong comparativeanalysisofher2copynumberbetweenplasmaandtissuesamplesingastriccancerusingdropletdigitalpcr
AT kimhyungho comparativeanalysisofher2copynumberbetweenplasmaandtissuesamplesingastriccancerusingdropletdigitalpcr
AT kimwooho comparativeanalysisofher2copynumberbetweenplasmaandtissuesamplesingastriccancerusingdropletdigitalpcr
AT leehyeseung comparativeanalysisofher2copynumberbetweenplasmaandtissuesamplesingastriccancerusingdropletdigitalpcr