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An analytical theory of balanced cellular growth

The biological fitness of microbes is largely determined by the rate with which they replicate their biomass composition. Mathematical models that maximize this balanced growth rate while accounting for mass conservation, reaction kinetics, and limits on dry mass per volume are inevitably non-linear...

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Detalles Bibliográficos
Autores principales: Dourado, Hugo, Lercher, Martin J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7060212/
https://www.ncbi.nlm.nih.gov/pubmed/32144263
http://dx.doi.org/10.1038/s41467-020-14751-w
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author Dourado, Hugo
Lercher, Martin J.
author_facet Dourado, Hugo
Lercher, Martin J.
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description The biological fitness of microbes is largely determined by the rate with which they replicate their biomass composition. Mathematical models that maximize this balanced growth rate while accounting for mass conservation, reaction kinetics, and limits on dry mass per volume are inevitably non-linear. Here, we develop a general theory for such models, termed Growth Balance Analysis (GBA), which provides explicit expressions for protein concentrations, fluxes, and growth rates. These variables are functions of the concentrations of cellular components, for which we calculate marginal fitness costs and benefits that are related to metabolic control coefficients. At maximal growth rate, the net benefits of all concentrations are equal. Based solely on physicochemical constraints, GBA unveils fundamental quantitative principles of cellular resource allocation and growth; it accurately predicts the relationship between growth rates and ribosome concentrations in E. coli and yeast and between growth rate and dry mass density in E. coli.
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spelling pubmed-70602122020-03-18 An analytical theory of balanced cellular growth Dourado, Hugo Lercher, Martin J. Nat Commun Article The biological fitness of microbes is largely determined by the rate with which they replicate their biomass composition. Mathematical models that maximize this balanced growth rate while accounting for mass conservation, reaction kinetics, and limits on dry mass per volume are inevitably non-linear. Here, we develop a general theory for such models, termed Growth Balance Analysis (GBA), which provides explicit expressions for protein concentrations, fluxes, and growth rates. These variables are functions of the concentrations of cellular components, for which we calculate marginal fitness costs and benefits that are related to metabolic control coefficients. At maximal growth rate, the net benefits of all concentrations are equal. Based solely on physicochemical constraints, GBA unveils fundamental quantitative principles of cellular resource allocation and growth; it accurately predicts the relationship between growth rates and ribosome concentrations in E. coli and yeast and between growth rate and dry mass density in E. coli. Nature Publishing Group UK 2020-03-06 /pmc/articles/PMC7060212/ /pubmed/32144263 http://dx.doi.org/10.1038/s41467-020-14751-w Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Dourado, Hugo
Lercher, Martin J.
An analytical theory of balanced cellular growth
title An analytical theory of balanced cellular growth
title_full An analytical theory of balanced cellular growth
title_fullStr An analytical theory of balanced cellular growth
title_full_unstemmed An analytical theory of balanced cellular growth
title_short An analytical theory of balanced cellular growth
title_sort analytical theory of balanced cellular growth
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7060212/
https://www.ncbi.nlm.nih.gov/pubmed/32144263
http://dx.doi.org/10.1038/s41467-020-14751-w
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