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An Online Calculator for the Prediction of Survival in Glioblastoma Patients Using Classical Statistics and Machine Learning

BACKGROUND: Although survival statistics in patients with glioblastoma multiforme (GBM) are well-defined at the group level, predicting individual patient survival remains challenging because of significant variation within strata. OBJECTIVE: To compare statistical and machine learning algorithms in...

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Autores principales: Senders, Joeky T, Staples, Patrick, Mehrtash, Alireza, Cote, David J, Taphoorn, Martin J B, Reardon, David A, Gormley, William B, Smith, Timothy R, Broekman, Marike L, Arnaout, Omar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7061165/
https://www.ncbi.nlm.nih.gov/pubmed/31586211
http://dx.doi.org/10.1093/neuros/nyz403
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author Senders, Joeky T
Staples, Patrick
Mehrtash, Alireza
Cote, David J
Taphoorn, Martin J B
Reardon, David A
Gormley, William B
Smith, Timothy R
Broekman, Marike L
Arnaout, Omar
author_facet Senders, Joeky T
Staples, Patrick
Mehrtash, Alireza
Cote, David J
Taphoorn, Martin J B
Reardon, David A
Gormley, William B
Smith, Timothy R
Broekman, Marike L
Arnaout, Omar
author_sort Senders, Joeky T
collection PubMed
description BACKGROUND: Although survival statistics in patients with glioblastoma multiforme (GBM) are well-defined at the group level, predicting individual patient survival remains challenging because of significant variation within strata. OBJECTIVE: To compare statistical and machine learning algorithms in their ability to predict survival in GBM patients and deploy the best performing model as an online survival calculator. METHODS: Patients undergoing an operation for a histopathologically confirmed GBM were extracted from the Surveillance Epidemiology and End Results (SEER) database (2005-2015) and split into a training and hold-out test set in an 80/20 ratio. Fifteen statistical and machine learning algorithms were trained based on 13 demographic, socioeconomic, clinical, and radiographic features to predict overall survival, 1-yr survival status, and compute personalized survival curves. RESULTS: In total, 20 821 patients met our inclusion criteria. The accelerated failure time model demonstrated superior performance in terms of discrimination (concordance index = 0.70), calibration, interpretability, predictive applicability, and computational efficiency compared to Cox proportional hazards regression and other machine learning algorithms. This model was deployed through a free, publicly available software interface (https://cnoc-bwh.shinyapps.io/gbmsurvivalpredictor/). CONCLUSION: The development and deployment of survival prediction tools require a multimodal assessment rather than a single metric comparison. This study provides a framework for the development of prediction tools in cancer patients, as well as an online survival calculator for patients with GBM. Future efforts should improve the interpretability, predictive applicability, and computational efficiency of existing machine learning algorithms, increase the granularity of population-based registries, and externally validate the proposed prediction tool.
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spelling pubmed-70611652020-03-12 An Online Calculator for the Prediction of Survival in Glioblastoma Patients Using Classical Statistics and Machine Learning Senders, Joeky T Staples, Patrick Mehrtash, Alireza Cote, David J Taphoorn, Martin J B Reardon, David A Gormley, William B Smith, Timothy R Broekman, Marike L Arnaout, Omar Neurosurgery Research—Human—Clinical Studies BACKGROUND: Although survival statistics in patients with glioblastoma multiforme (GBM) are well-defined at the group level, predicting individual patient survival remains challenging because of significant variation within strata. OBJECTIVE: To compare statistical and machine learning algorithms in their ability to predict survival in GBM patients and deploy the best performing model as an online survival calculator. METHODS: Patients undergoing an operation for a histopathologically confirmed GBM were extracted from the Surveillance Epidemiology and End Results (SEER) database (2005-2015) and split into a training and hold-out test set in an 80/20 ratio. Fifteen statistical and machine learning algorithms were trained based on 13 demographic, socioeconomic, clinical, and radiographic features to predict overall survival, 1-yr survival status, and compute personalized survival curves. RESULTS: In total, 20 821 patients met our inclusion criteria. The accelerated failure time model demonstrated superior performance in terms of discrimination (concordance index = 0.70), calibration, interpretability, predictive applicability, and computational efficiency compared to Cox proportional hazards regression and other machine learning algorithms. This model was deployed through a free, publicly available software interface (https://cnoc-bwh.shinyapps.io/gbmsurvivalpredictor/). CONCLUSION: The development and deployment of survival prediction tools require a multimodal assessment rather than a single metric comparison. This study provides a framework for the development of prediction tools in cancer patients, as well as an online survival calculator for patients with GBM. Future efforts should improve the interpretability, predictive applicability, and computational efficiency of existing machine learning algorithms, increase the granularity of population-based registries, and externally validate the proposed prediction tool. Oxford University Press 2020-02 2019-10-05 /pmc/articles/PMC7061165/ /pubmed/31586211 http://dx.doi.org/10.1093/neuros/nyz403 Text en © Congress of Neurological Surgeons 2019. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Research—Human—Clinical Studies
Senders, Joeky T
Staples, Patrick
Mehrtash, Alireza
Cote, David J
Taphoorn, Martin J B
Reardon, David A
Gormley, William B
Smith, Timothy R
Broekman, Marike L
Arnaout, Omar
An Online Calculator for the Prediction of Survival in Glioblastoma Patients Using Classical Statistics and Machine Learning
title An Online Calculator for the Prediction of Survival in Glioblastoma Patients Using Classical Statistics and Machine Learning
title_full An Online Calculator for the Prediction of Survival in Glioblastoma Patients Using Classical Statistics and Machine Learning
title_fullStr An Online Calculator for the Prediction of Survival in Glioblastoma Patients Using Classical Statistics and Machine Learning
title_full_unstemmed An Online Calculator for the Prediction of Survival in Glioblastoma Patients Using Classical Statistics and Machine Learning
title_short An Online Calculator for the Prediction of Survival in Glioblastoma Patients Using Classical Statistics and Machine Learning
title_sort online calculator for the prediction of survival in glioblastoma patients using classical statistics and machine learning
topic Research—Human—Clinical Studies
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7061165/
https://www.ncbi.nlm.nih.gov/pubmed/31586211
http://dx.doi.org/10.1093/neuros/nyz403
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