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The Genome of Setaria digitata: A Cattle Nematode Closely Related to Human Filarial Parasites

Here we present the draft genome sequence of Setaria digitata, a parasitic nematode affecting cattle. Due to its similarity to Wuchereria bancrofti, the parasitic nematode that causes lymphatic filariasis in humans, S. digitata has been used as a model organism at the genomic level to find drug targ...

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Autores principales: Senanayake, Kanchana S, Söderberg, Jonas, Põlajev, Aleksei, Malmberg, Maja, Karunanayake, Eric H, Tennekoon, Kamani H, Samarakoon, Sameera R, Bongcam-Rudloff, Erik, Niazi, Adnan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7061230/
https://www.ncbi.nlm.nih.gov/pubmed/32022853
http://dx.doi.org/10.1093/gbe/evaa017
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author Senanayake, Kanchana S
Söderberg, Jonas
Põlajev, Aleksei
Malmberg, Maja
Karunanayake, Eric H
Tennekoon, Kamani H
Samarakoon, Sameera R
Bongcam-Rudloff, Erik
Niazi, Adnan
author_facet Senanayake, Kanchana S
Söderberg, Jonas
Põlajev, Aleksei
Malmberg, Maja
Karunanayake, Eric H
Tennekoon, Kamani H
Samarakoon, Sameera R
Bongcam-Rudloff, Erik
Niazi, Adnan
author_sort Senanayake, Kanchana S
collection PubMed
description Here we present the draft genome sequence of Setaria digitata, a parasitic nematode affecting cattle. Due to its similarity to Wuchereria bancrofti, the parasitic nematode that causes lymphatic filariasis in humans, S. digitata has been used as a model organism at the genomic level to find drug targets which can be used for the development of novel drugs and/or vaccines for human filariasis. Setaria digitata causes cerebrospinal nematodiasis in goats, sheep, and horses posing a serious threat to livestock in developing countries. The genome sequence of S. digitata will assist in finding candidate genes to use as drug targets in both S. digitata and W. bancrofti. The assembled draft genome is ∼90 Mb long and contains 8,974 genomic scaffolds with a G+C content of 31.73%.
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spelling pubmed-70612302020-03-12 The Genome of Setaria digitata: A Cattle Nematode Closely Related to Human Filarial Parasites Senanayake, Kanchana S Söderberg, Jonas Põlajev, Aleksei Malmberg, Maja Karunanayake, Eric H Tennekoon, Kamani H Samarakoon, Sameera R Bongcam-Rudloff, Erik Niazi, Adnan Genome Biol Evol Genome Report Here we present the draft genome sequence of Setaria digitata, a parasitic nematode affecting cattle. Due to its similarity to Wuchereria bancrofti, the parasitic nematode that causes lymphatic filariasis in humans, S. digitata has been used as a model organism at the genomic level to find drug targets which can be used for the development of novel drugs and/or vaccines for human filariasis. Setaria digitata causes cerebrospinal nematodiasis in goats, sheep, and horses posing a serious threat to livestock in developing countries. The genome sequence of S. digitata will assist in finding candidate genes to use as drug targets in both S. digitata and W. bancrofti. The assembled draft genome is ∼90 Mb long and contains 8,974 genomic scaffolds with a G+C content of 31.73%. Oxford University Press 2020-02-05 /pmc/articles/PMC7061230/ /pubmed/32022853 http://dx.doi.org/10.1093/gbe/evaa017 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Genome Report
Senanayake, Kanchana S
Söderberg, Jonas
Põlajev, Aleksei
Malmberg, Maja
Karunanayake, Eric H
Tennekoon, Kamani H
Samarakoon, Sameera R
Bongcam-Rudloff, Erik
Niazi, Adnan
The Genome of Setaria digitata: A Cattle Nematode Closely Related to Human Filarial Parasites
title The Genome of Setaria digitata: A Cattle Nematode Closely Related to Human Filarial Parasites
title_full The Genome of Setaria digitata: A Cattle Nematode Closely Related to Human Filarial Parasites
title_fullStr The Genome of Setaria digitata: A Cattle Nematode Closely Related to Human Filarial Parasites
title_full_unstemmed The Genome of Setaria digitata: A Cattle Nematode Closely Related to Human Filarial Parasites
title_short The Genome of Setaria digitata: A Cattle Nematode Closely Related to Human Filarial Parasites
title_sort genome of setaria digitata: a cattle nematode closely related to human filarial parasites
topic Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7061230/
https://www.ncbi.nlm.nih.gov/pubmed/32022853
http://dx.doi.org/10.1093/gbe/evaa017
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